Till Soerensen
| Snapshot Date: 2024-12-23 13:40 -0500 (Mon, 23 Dec 2024) |
| git_url: https://git.bioconductor.org/packages/immunoClust |
| git_branch: devel |
| git_last_commit: 17b4bb8 |
| git_last_commit_date: 2024-11-25 08:59:04 -0500 (Mon, 25 Nov 2024) |
| Back to Multiple platform build/check report for BioC 3.21: simplified long |
|
This page was generated on 2024-12-24 11:46 -0500 (Tue, 24 Dec 2024).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 24.04.1 LTS) | x86_64 | R Under development (unstable) (2024-10-21 r87258) -- "Unsuffered Consequences" | 4754 |
| palomino7 | Windows Server 2022 Datacenter | x64 | R Under development (unstable) (2024-10-26 r87273 ucrt) -- "Unsuffered Consequences" | 4472 |
| lconway | macOS 12.7.1 Monterey | x86_64 | R Under development (unstable) (2024-11-20 r87352) -- "Unsuffered Consequences" | 4426 |
| kjohnson3 | macOS 13.7.1 Ventura | arm64 | R Under development (unstable) (2024-11-20 r87352) -- "Unsuffered Consequences" | 4381 |
| kunpeng2 | Linux (openEuler 22.03 LTS-SP1) | aarch64 | R Under development (unstable) (2024-11-24 r87369) -- "Unsuffered Consequences" | 4373 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 1014/2274 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| immunoClust 1.39.3 (landing page) Till Soerensen
| nebbiolo1 | Linux (Ubuntu 24.04.1 LTS) / x86_64 | OK | OK | OK | | ||||||||
| palomino7 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | | ||||||||
| lconway | macOS 12.7.1 Monterey / x86_64 | OK | OK | OK | OK | | ||||||||
| kjohnson3 | macOS 13.7.1 Ventura / arm64 | OK | OK | OK | OK | | ||||||||
| kunpeng2 | Linux (openEuler 22.03 LTS-SP1) / aarch64 | OK | ERROR | skipped | ||||||||||
|
To the developers/maintainers of the immunoClust package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/immunoClust.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. - See Martin Grigorov's blog post for how to debug Linux ARM64 related issues on a x86_64 host. |
| Package: immunoClust |
| Version: 1.39.3 |
| Command: /home/biocbuild/R/R/bin/R CMD build --keep-empty-dirs --no-resave-data immunoClust |
| StartedAt: 2024-12-23 23:51:30 -0000 (Mon, 23 Dec 2024) |
| EndedAt: 2024-12-23 23:55:38 -0000 (Mon, 23 Dec 2024) |
| EllapsedTime: 248.2 seconds |
| RetCode: 1 |
| Status: ERROR |
| PackageFile: None |
| PackageFileSize: NA |
##############################################################################
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###
### Running command:
###
### /home/biocbuild/R/R/bin/R CMD build --keep-empty-dirs --no-resave-data immunoClust
###
##############################################################################
##############################################################################
* checking for file ‘immunoClust/DESCRIPTION’ ... OK
* preparing ‘immunoClust’:
* checking DESCRIPTION meta-information ... OK
* cleaning src
* running ‘cleanup’
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘immunoClust.Rnw’ using Sweave
Loading required package: flowCore
filtered from above:318
filtered from below:0
cluster 1(N=151) has 2 sub-cluster at 2 (8), ICL=125<>26
split 1 into 2 clusters
cluster 1(N=151) has 2 sub-cluster at 2 (8), ICL=0<>26
Model Refinement takes 0.017 mins(max 1: 0.017)
Fit Model 1 of (6/10) K=1->2 N=302
EM 2 takes 0 mins, 9 iterations
cluster 2(N=93) has 3 sub-cluster at 3 (6), ICL=98<>30
split 2 into 3 clusters
cluster 1(N=211) has 6 sub-cluster at 6 (20), ICL=8.2<>30
cluster 1(N=211) has 6 sub-cluster at 6 (20), ICL=0<>30
Model Refinement takes 0.083 mins(max 1: 0.05)
Fit Model 2 of (6/10) K=2->4 N=605
EM 4 takes 0 mins, 9 iterations
cluster 2(N=52) has 2 sub-cluster at 2 (28), ICL=55<>34
split 2 into 2 clusters
cluster 1(N=433) has 2 sub-cluster at 2 (20), ICL=54<>34
split 1 into 2 clusters
cluster 3(N=67) has 5 sub-cluster at 5 (62), ICL=35<>34
split 3 into 5 clusters
Model Refinement takes 0.1 mins(max 1: 0.033)
Fit Model 3 of (6/10) K=4->10 N=1210
EM 7 takes 0 mins, 10 iterations
cluster 7(N=113) has 3 sub-cluster at 3 (32), ICL=52<>37
split 7 into 3 clusters
cluster 1(N=52) has 2 sub-cluster at 2 (6), ICL=30<>37
cluster 3(N=123) has 2 sub-cluster at 2 (18), ICL=30<>37
cluster 5(N=86) has 5 sub-cluster at 6 (30), ICL=24<>37
cluster 4(N=47) has 2 sub-cluster at 2 (19), ICL=20<>37
cluster 6(N=41) has 2 sub-cluster at 2 (8), ICL=11<>37
cluster 1(N=52) has 2 sub-cluster at 2 (6), ICL=0<>37
Model Refinement takes 0.2 mins(max 2: 0.067)
Fit Model 4 of (6/10) K=7->9 N=2420
EM 9 takes 0 mins, 22 iterations
cluster 1(N=116) has 3 sub-cluster at 3 (12), ICL=58<>41
split 1 into 3 clusters
cluster 3(N=253) has 2 sub-cluster at 2 (9), ICL=45<>41
split 3 into 2 clusters
cluster 7(N=128) has 8 sub-cluster at 8 (43), ICL=20<>41
cluster 9(N=96) has 6 sub-cluster at 6 (13), ICL=14<>41
cluster 5(N=149) has 7 sub-cluster at 8 (51), ICL=13<>41
cluster 4(N=149) has 5 sub-cluster at 6 (47), ICL=9.9<>41
cluster 6(N=55) has 2 sub-cluster at 2 (7), ICL=9.7<>41
cluster 8(N=24) has 2 sub-cluster at 2 (6), ICL=9.4<>41
cluster 1(N=116) has 3 sub-cluster at 3 (12), ICL=0<>41
Model Refinement takes 0.25 mins(max 2: 0.1)
Fit Model 5 of (6/10) K=9->12 N=4841
EM 12 takes 0 mins, 9 iterations
cluster 1(N=55) has 2 sub-cluster at 2 (8), ICL=23<>45
cluster 6(N=31) has 2 sub-cluster at 2 (8), ICL=22<>45
cluster 11(N=67) has 2 sub-cluster at 2 (6), ICL=19<>45
cluster 10(N=243) has 2 sub-cluster at 2 (8), ICL=18<>45
cluster 5(N=439) has 3 sub-cluster at 3 (10), ICL=10<>45
cluster 12(N=173) has 7 sub-cluster at 7 (33), ICL=8.7<>45
cluster 9(N=125) has 4 sub-cluster at 5 (15), ICL=7.9<>45
cluster 2(N=162) has 7 sub-cluster at 8 (22), ICL=7.6<>45
cluster 3(N=33) has 3 sub-cluster at 4 (81), ICL=7<>45
cluster 8(N=322) has 7 sub-cluster at 8 (30), ICL=1.5<>45
cluster 1(N=55) has 2 sub-cluster at 2 (8), ICL=0<>45
Model Refinement takes 0.28 mins(max 4: 0.083)
Fit Model 6 of (6/10) K=12->12 N=9682
EM 12 takes 0.017 mins, 15 iterations
cluster 5(N=916) has 2 sub-cluster at 2 (31), ICL=61<>48
split 5 into 2 clusters
cluster 10(N=510) has 2 sub-cluster at 2 (14), ICL=50<>48
split 10 into 2 clusters
cluster 6(N=50) has 2 sub-cluster at 2 (100), ICL=38<>48
cluster 11(N=135) has 2 sub-cluster at 2 (6), ICL=36<>48
cluster 1(N=122) has 8 sub-cluster at 8 (28), ICL=20<>48
cluster 3(N=72) has 2 sub-cluster at 2 (9), ICL=20<>48
cluster 9(N=195) has 3 sub-cluster at 4 (19), ICL=18<>48
cluster 12(N=358) has 2 sub-cluster at 3 (8), ICL=11<>48
cluster 2(N=314) has 2 sub-cluster at 2 (8), ICL=7.6<>48
cluster 1(N=122) has 8 sub-cluster at 8 (28), ICL=0<>48
Model Refinement takes 0.37 mins(max 4: 0.1)
Fit Model 7 of (6/10) K=12->14 N=9682
EM 14 takes 0.017 mins, 4 iterations
cluster 13(N=127) has 2 sub-cluster at 2 (5), ICL=38<>48
cluster 1(N=122) has 3 sub-cluster at 3 (28), ICL=24<>48
cluster 3(N=72) has 2 sub-cluster at 2 (8), ICL=20<>48
cluster 10(N=193) has 2 sub-cluster at 2 (30), ICL=16<>48
cluster 14(N=360) has 6 sub-cluster at 7 (29), ICL=12<>48
cluster 7(N=51) has 2 sub-cluster at 2 (9), ICL=8.3<>48
cluster 2(N=313) has 2 sub-cluster at 2 (8), ICL=7.8<>48
cluster 12(N=379) has 6 sub-cluster at 7 (31), ICL=7.6<>48
cluster 11(N=166) has 3 sub-cluster at 3 (37), ICL=6.9<>48
cluster 5(N=411) has 8 sub-cluster at 8 (41), ICL=5.4<>48
cluster 6(N=564) has 2 sub-cluster at 2 (13), ICL=1.1<>48
cluster 1(N=122) has 3 sub-cluster at 3 (28), ICL=0<>48
Model Refinement takes 0.42 mins(max 4: 0.1)
Fit Model 8 of (6/10) K=14->14 N=9682
EM 14 takes 0 mins, 3 iterations
Process completed at8
Major Iteration (Trans) (6/4) takes 1.8 mins
filtered from above:318
filtered from below:0
cluster 1(N=151) has 2 sub-cluster at 2 (12), ICL=160<>22
split 1 into 2 clusters
cluster 1(N=151) has 2 sub-cluster at 2 (12), ICL=0<>22
Model Refinement takes 0.033 mins(max 1: 0.033)
Fit Model 1 of (6/10) K=1->2 N=302
EM 2 takes 0 mins, 5 iterations
cluster 1(N=103) has 3 sub-cluster at 3 (6), ICL=121<>25
split 1 into 3 clusters
cluster 2(N=200) has 8 sub-cluster at 8 (18), ICL=22<>25
cluster 1(N=103) has 3 sub-cluster at 3 (6), ICL=0<>25
Model Refinement takes 0.033 mins(max 1: 0.017)
Fit Model 2 of (6/10) K=2->4 N=605
EM 4 takes 0 mins, 10 iterations
cluster 4(N=426) has 2 sub-cluster at 2 (14), ICL=69<>28
split 4 into 2 clusters
cluster 3(N=53) has 2 sub-cluster at 2 (6), ICL=29<>28
split 3 into 2 clusters
cluster 1(N=63) has 4 sub-cluster at 4 (9), ICL=20<>28
cluster 1(N=63) has 4 sub-cluster at 4 (9), ICL=0<>28
Model Refinement takes 0.05 mins(max 1: 0.017)
Fit Model 3 of (6/10) K=4->6 N=1210
EM 6 takes 0 mins, 10 iterations
cluster 2(N=108) has 2 sub-cluster at 2 (4), ICL=39<>31
split 2 into 2 clusters
cluster 5(N=66) has 3 sub-cluster at 3 (7), ICL=37<>31
split 5 into 3 clusters
cluster 4(N=65) has 5 sub-cluster at 5 (15), ICL=21<>31
cluster 1(N=148) has 5 sub-cluster at 5 (22), ICL=20<>31
cluster 3(N=48) has 2 sub-cluster at 2 (24), ICL=18<>31
cluster 1(N=148) has 5 sub-cluster at 5 (22), ICL=0<>31
Model Refinement takes 0.12 mins(max 2: 0.033)
Fit Model 4 of (6/10) K=6->9 N=2420
EM 9 takes 0 mins, 23 iterations
cluster 7(N=15) has 2 sub-cluster at 2 (100), ICL=33<>34
cluster 6(N=43) has 3 sub-cluster at 3 (24), ICL=26<>34
cluster 5(N=131) has 8 sub-cluster at 8 (30), ICL=25<>34
cluster 4(N=90) has 4 sub-cluster at 4 (29), ICL=24<>34
cluster 1(N=269) has 7 sub-cluster at 7 (30), ICL=15<>34
cluster 2(N=235) has 3 sub-cluster at 3 (17), ICL=12<>34
cluster 8(N=90) has 2 sub-cluster at 2 (9), ICL=8.6<>34
cluster 3(N=14) has 2 sub-cluster at 2 (17), ICL=1.3<>34
cluster 1(N=269) has 7 sub-cluster at 7 (30), ICL=0<>34
Model Refinement takes 0.2 mins(max 9: 0.083)
Fit Model 5 of (6/10) K=9->9 N=4841
EM 9 takes 0 mins, 7 iterations
cluster 5(N=296) has 3 sub-cluster at 3 (9), ICL=36<>37
cluster 6(N=77) has 2 sub-cluster at 2 (25), ICL=34<>37
cluster 4(N=215) has 4 sub-cluster at 4 (30), ICL=29<>37
cluster 2(N=432) has 3 sub-cluster at 3 (12), ICL=20<>37
cluster 1(N=553) has 2 sub-cluster at 2 (6), ICL=20<>37
cluster 8(N=148) has 6 sub-cluster at 7 (5), ICL=12<>37
cluster 7(N=38) has 2 sub-cluster at 3 (24), ICL=7.9<>37
cluster 3(N=23) has 2 sub-cluster at 2 (100), ICL=3.4<>37
cluster 1(N=553) has 2 sub-cluster at 2 (6), ICL=0<>37
Model Refinement takes 0.23 mins(max 9: 0.083)
Fit Model 6 of (6/10) K=9->9 N=9682
EM 9 takes 0.017 mins, 5 iterations
cluster 5(N=557) has 3 sub-cluster at 3 (11), ICL=69<>40
split 5 into 3 clusters
cluster 2(N=916) has 3 sub-cluster at 3 (10), ICL=56<>40
split 2 into 3 clusters
cluster 1(N=1121) has 2 sub-cluster at 2 (8), ICL=52<>40
split 1 into 2 clusters
cluster 6(N=154) has 4 sub-cluster at 4 (13), ICL=45<>40
split 6 into 4 clusters
cluster 4(N=392) has 3 sub-cluster at 3 (34), ICL=41<>40
split 4 into 3 clusters
cluster 3(N=49) has 2 sub-cluster at 2 (100), ICL=40<>40
cluster 7(N=76) has 4 sub-cluster at 5 (18), ICL=14<>40
cluster 8(N=315) has 2 sub-cluster at 2 (9), ICL=9.8<>40
cluster 1(N=1121) has 2 sub-cluster at 2 (8), ICL=0<>40
Model Refinement takes 0.3 mins(max 9: 0.083)
Fit Model 7 of (6/10) K=9->19 N=9682
EM 19 takes 0.017 mins, 4 iterations
cluster 12(N=78) has 2 sub-cluster at 2 (17), ICL=20<>40
cluster 14(N=22) has 2 sub-cluster at 2 (7), ICL=16<>40
cluster 13(N=88) has 4 sub-cluster at 4 (25), ICL=14<>40
cluster 9(N=133) has 5 sub-cluster at 5 (38), ICL=14<>40
cluster 10(N=358) has 4 sub-cluster at 4 (14), ICL=13<>40
cluster 16(N=28) has 2 sub-cluster at 2 (19), ICL=12<>40
cluster 15(N=22) has 2 sub-cluster at 2 (5), ICL=11<>40
cluster 11(N=181) has 6 sub-cluster at 8 (26), ICL=11<>40
cluster 18(N=309) has 2 sub-cluster at 2 (8), ICL=9.6<>40
cluster 8(N=119) has 4 sub-cluster at 4 (19), ICL=9.2<>40
cluster 5(N=50) has 2 sub-cluster at 2 (100), ICL=6.9<>40
cluster 17(N=75) has 3 sub-cluster at 4 (12), ICL=6.7<>40
cluster 7(N=230) has 4 sub-cluster at 4 (25), ICL=4.1<>40
cluster 2(N=408) has 7 sub-cluster at 8 (36), ICL=2.7<>40
cluster 3(N=384) has 7 sub-cluster at 7 (28), ICL=0.41<>40
cluster 2(N=408) has 7 sub-cluster at 8 (36), ICL=0<>40
Model Refinement takes 0.42 mins(max 19: 0.1)
Fit Model 8 of (6/10) K=19->19 N=9682
EM 19 takes 0 mins, 3 iterations
Process completed at8
Major Iteration (Trans) (6/4) takes 1.4 mins
Fit Model 1 of 10 with 8 clusters
=> results in 8 clusters
Fit Model 2 of 10 with 21 clusters
=> results in 13 clusters
Fit Model 3 of 10 with 23 clusters
=> results in 19 clusters
Fit Model 4 of 10 with 26 clusters
=> results in 21 clusters
Fit Model 5 of 10 with 25 clusters
=> results in 21 clusters
Error: processing vignette 'immunoClust.Rnw' failed with diagnostics:
Running 'texi2dvi' on 'immunoClust.tex' failed.
LaTeX errors:
! LaTeX Error: File `inputenx.sty' not found.
Type X to quit or <RETURN> to proceed,
or enter new name. (Default extension: sty)
! Emergency stop.
<read *>
l.15 ^^M
! ==> Fatal error occurred, no output PDF file produced!
--- failed re-building ‘immunoClust.Rnw’
SUMMARY: processing the following file failed:
‘immunoClust.Rnw’
Error: Vignette re-building failed.
Execution halted