Multiple platform build/check report for BioC 3.21 - BUILD results for hmdbQuery on nebbiolo1

Hostname	OS	Arch (*)	R version	Installed pkgs
nebbiolo1	Linux (Ubuntu 24.04.1 LTS)	x86_64	R Under development (unstable) (2025-01-20 r87609) -- "Unsuffered Consequences"	4716
palomino7	Windows Server 2022 Datacenter	x64	R Under development (unstable) (2025-01-21 r87610 ucrt) -- "Unsuffered Consequences"	4478
lconway	macOS 12.7.1 Monterey	x86_64	R Under development (unstable) (2025-01-22 r87618) -- "Unsuffered Consequences"	4489
kjohnson3	macOS 13.7.1 Ventura	arm64	R Under development (unstable) (2025-01-20 r87609) -- "Unsuffered Consequences"	4442
Click on any hostname to see more info about the system (e.g. compilers) () as reported by 'uname -p', except on Windows and Mac OS X*

BUILD results for hmdbQuery on nebbiolo1

To the developers/maintainers of the hmdbQuery package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/hmdbQuery.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results

Summary

Package: hmdbQuery

Version: 1.27.0

Command: /home/biocbuild/bbs-3.21-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data hmdbQuery

StartedAt: 2025-02-03 17:48:32 -0500 (Mon, 03 Feb 2025)

EndedAt: 2025-02-03 17:48:55 -0500 (Mon, 03 Feb 2025)

EllapsedTime: 23.0 seconds

RetCode: 1

Status: ERROR

PackageFile: None

PackageFileSize: NA

Command output

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### Running command:
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###   /home/biocbuild/bbs-3.21-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data hmdbQuery
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* checking for file ‘hmdbQuery/DESCRIPTION’ ... OK
* preparing ‘hmdbQuery’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘hmdbQuery.Rmd’ using rmarkdown

Quitting from lines 38-41 [lk1] (hmdbQuery.Rmd)
Error: processing vignette 'hmdbQuery.Rmd' failed with diagnostics:
cannot open the connection to 'http://www.hmdb.ca/metabolites/HMDB0000001.xml'
--- failed re-building ‘hmdbQuery.Rmd’

SUMMARY: processing the following file failed:
  ‘hmdbQuery.Rmd’

Error: Vignette re-building failed.
Execution halted