| Back to Multiple platform build/check report for BioC 3.23: simplified long |
|
This page was generated on 2026-03-21 11:34 -0400 (Sat, 21 Mar 2026).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 24.04.3 LTS) | x86_64 | R Under development (unstable) (2026-03-05 r89546) -- "Unsuffered Consequences" | 4866 |
| kjohnson3 | macOS 13.7.7 Ventura | arm64 | R Under development (unstable) (2026-03-20 r89666) -- "Unsuffered Consequences" | 4545 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 1001/2368 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| hipathia 3.11.1 (landing page) Marta R. Hidalgo
| nebbiolo1 | Linux (Ubuntu 24.04.3 LTS) / x86_64 | OK | ERROR | skipped | |||||||||
| kjohnson3 | macOS 13.7.7 Ventura / arm64 | OK | ERROR | skipped | skipped | |||||||||
| See other builds for hipathia in R Universe. | ||||||||||||||
|
To the developers/maintainers of the hipathia package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/hipathia.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: hipathia |
| Version: 3.11.1 |
| Command: /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data hipathia |
| StartedAt: 2026-03-20 19:35:04 -0400 (Fri, 20 Mar 2026) |
| EndedAt: 2026-03-20 19:35:26 -0400 (Fri, 20 Mar 2026) |
| EllapsedTime: 22.2 seconds |
| RetCode: 1 |
| Status: ERROR |
| PackageFile: None |
| PackageFileSize: NA |
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### Running command:
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### /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data hipathia
###
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* checking for file ‘hipathia/DESCRIPTION’ ... OK
* preparing ‘hipathia’:
* checking DESCRIPTION meta-information ... OK
* installing the package (it is needed to build vignettes)
* creating vignettes ... ERROR
--- re-building ‘hipathia-vignette.Rmd’ using rmarkdown
Quitting from hipathia-vignette.Rmd:239-242 [unnamed-chunk-7]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `.local()`:
! 'i' must be length 1
---
Backtrace:
x
1. \-hipathia::translate_data(brca_data, "hsa")
2. \-hipathia:::translate_matrix(mat, species)
3. \-hipathia:::load_xref(species)
4. +-base::suppressMessages(hp[[names(hp)[hp$title == file]]])
5. | \-base::withCallingHandlers(...)
6. +-hp[[names(hp)[hp$title == file]]]
7. \-hp[[names(hp)[hp$title == file]]]
8. \-AnnotationHub (local) .local(x, i, j = j, ...)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'hipathia-vignette.Rmd' failed with diagnostics:
'i' must be length 1
--- failed re-building ‘hipathia-vignette.Rmd’
SUMMARY: processing the following file failed:
‘hipathia-vignette.Rmd’
Error: Vignette re-building failed.
Execution halted