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This page was generated on 2025-05-16 12:04 -0400 (Fri, 16 May 2025).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 24.04.1 LTS)x86_644.5.0 (2025-04-11) -- "How About a Twenty-Six" 4749
palomino8Windows Server 2022 Datacenterx644.5.0 (2025-04-11 ucrt) -- "How About a Twenty-Six" 4510
lconwaymacOS 12.7.1 Montereyx86_644.5.0 Patched (2025-04-21 r88169) -- "How About a Twenty-Six" 4548
taishanLinux (openEuler 24.03 LTS)aarch644.5.0 (2025-04-11) -- "How About a Twenty-Six" 4453
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 935/2304HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
h5vc 2.43.0  (landing page)
Paul Theodor Pyl
Snapshot Date: 2025-05-15 13:00 -0400 (Thu, 15 May 2025)
git_url: https://git.bioconductor.org/packages/h5vc
git_branch: devel
git_last_commit: 1ae9c98
git_last_commit_date: 2025-04-15 10:27:35 -0400 (Tue, 15 Apr 2025)
nebbiolo2Linux (Ubuntu 24.04.1 LTS) / x86_64  OK    ERROR  skipped
palomino8Windows Server 2022 Datacenter / x64  OK    OK    WARNINGS    OK  UNNEEDED, same version is already published
lconwaymacOS 12.7.1 Monterey / x86_64  OK    ERROR  skippedskipped
taishanLinux (openEuler 24.03 LTS) / aarch64  OK    OK    WARNINGS  

BUILD results for h5vc on lconway

To the developers/maintainers of the h5vc package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/h5vc.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: h5vc
Version: 2.43.0
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data h5vc
StartedAt: 2025-05-15 17:05:50 -0400 (Thu, 15 May 2025)
EndedAt: 2025-05-15 17:11:32 -0400 (Thu, 15 May 2025)
EllapsedTime: 342.8 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
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###
### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data h5vc
###
##############################################################################
##############################################################################


* checking for file ‘h5vc/DESCRIPTION’ ... OK
* preparing ‘h5vc’:
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘h5vc.simple.genome.browser.Rmd’ using rmarkdown
[WARNING] This document format requires a nonempty <title> element.
  Please specify either 'title' or 'pagetitle' in the metadata,
  e.g. by using --metadata pagetitle="..." on the command line.
  Falling back to 'h5vc.simple.genome.browser.knit'
--- finished re-building ‘h5vc.simple.genome.browser.Rmd’

--- re-building ‘h5vc.tour.Rmd’ using rmarkdown
2025-05-15 17:06:24.493 R[18326:11490266] XType: com.apple.fonts is not accessible.
2025-05-15 17:06:24.494 R[18326:11490266] XType: XTFontStaticRegistry is enabled.

Quitting from h5vc.tour.Rmd:233-254 [unnamed-chunk-1]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
NULL
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'h5vc.tour.Rmd' failed with diagnostics:
Failed to perform HTTP request.
Caused by error in `curl::curl_fetch_memory()`:
! Server returned nothing (no headers, no data) [www.ensembl.org]: Empty reply from server
--- failed re-building ‘h5vc.tour.Rmd’

SUMMARY: processing the following file failed:
  ‘h5vc.tour.Rmd’

Error: Vignette re-building failed.
Execution halted