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### Running command:
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###   /home/biocbuild/R/R/bin/R CMD build --keep-empty-dirs --no-resave-data gpuMagic
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* checking for file ‘gpuMagic/DESCRIPTION’ ... OK
* preparing ‘gpuMagic’:
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to build vignettes
      -----------------------------------
* installing *source* package ‘gpuMagic’ ...
** using staged installation
** libs
using C++ compiler: ‘aarch64-unknown-linux-gnu-g++ (GCC) 14.2.0’
using C++11
/opt/ohpc/pub/compiler/gcc/14.2.0/bin/aarch64-unknown-linux-gnu-g++ -std=gnu++11 -I"/home/biocbuild/R/R/include" -DNDEBUG -I/home/biocbuild/R/R/include -I../inst/include/OpenCL_header -DCL_TARGET_OPENCL_VERSION=220 -DCL_USE_DEPRECATED_OPENCL_1_2_APIS  -DCL_SILENCE_DEPRECATION -I'/home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library/Rcpp/include' -I/usr/local/include    -fPIC  -g -O2  -Wall -Werror=format-security -DR_NO_REMAP -c C_Interface.cpp -o C_Interface.o
C_Interface.cpp: In function ‘SEXPREC* getPlatformNum()’:
C_Interface.cpp:16:28: error: ‘ScalarInteger’ was not declared in this scope; did you mean ‘Rf_ScalarInteger’?
   16 |         SEXP platformNum = ScalarInteger(kernelManager::getPlatformNum());
      |                            ^~~~~~~~~~~~~
      |                            Rf_ScalarInteger
C_Interface.cpp: In function ‘SEXPREC* getDeviceNum(SEXP)’:
C_Interface.cpp:22:68: error: ‘asInteger’ was not declared in this scope; did you mean ‘Rf_asInteger’?
   22 |         SEXP deviceNum = ScalarInteger(kernelManager::getDeviceNum(asInteger(platform)));
      |                                                                    ^~~~~~~~~
      |                                                                    Rf_asInteger
C_Interface.cpp:22:26: error: ‘ScalarInteger’ was not declared in this scope; did you mean ‘Rf_ScalarInteger’?
   22 |         SEXP deviceNum = ScalarInteger(kernelManager::getDeviceNum(asInteger(platform)));
      |                          ^~~~~~~~~~~~~
      |                          Rf_ScalarInteger
C_Interface.cpp: In function ‘SEXPREC* getDeviceInfo(SEXP, SEXP)’:
C_Interface.cpp:28:33: error: ‘asInteger’ was not declared in this scope; did you mean ‘Rf_asInteger’?
   28 |         deviceIdentifier id = { asInteger(platform) ,asInteger(device) };
      |                                 ^~~~~~~~~
      |                                 Rf_asInteger
In file included from C_Interface.h:4,
                 from C_Interface.cpp:10:
C_Interface.cpp:30:31: error: ‘allocVector’ was not declared in this scope; did you mean ‘Rf_allocVector’?
   30 |         SEXP info_R = PROTECT(allocVector(VECSXP, 8));
      |                               ^~~~~~~~~~~
/home/biocbuild/R/R/include/Rinternals.h:388:36: note: in definition of macro ‘PROTECT’
  388 | #define PROTECT(s)      Rf_protect(s)
      |                                    ^
C_Interface.cpp:32:43: error: ‘mkString’ was not declared in this scope; did you mean ‘asString’?
   32 |         SET_VECTOR_ELT(info_R, 0, PROTECT(mkString(info.device_name.c_str())));
      |                                           ^~~~~~~~
/home/biocbuild/R/R/include/Rinternals.h:388:36: note: in definition of macro ‘PROTECT’
  388 | #define PROTECT(s)      Rf_protect(s)
      |                                    ^
C_Interface.cpp:33:43: error: ‘ScalarInteger’ was not declared in this scope; did you mean ‘Rf_ScalarInteger’?
   33 |         SET_VECTOR_ELT(info_R, 1, PROTECT(ScalarInteger(info.device_type)));
      |                                           ^~~~~~~~~~~~~
/home/biocbuild/R/R/include/Rinternals.h:388:36: note: in definition of macro ‘PROTECT’
  388 | #define PROTECT(s)      Rf_protect(s)
      |                                    ^
C_Interface.cpp:34:43: error: ‘ScalarReal’ was not declared in this scope; did you mean ‘Rf_ScalarReal’?
   34 |         SET_VECTOR_ELT(info_R, 2, PROTECT(ScalarReal(info.global_memory)));
      |                                           ^~~~~~~~~~
/home/biocbuild/R/R/include/Rinternals.h:388:36: note: in definition of macro ‘PROTECT’
  388 | #define PROTECT(s)      Rf_protect(s)
      |                                    ^
C_Interface.cpp:36:43: error: ‘ScalarLogical’ was not declared in this scope; did you mean ‘Rf_ScalarLogical’?
   36 |         SET_VECTOR_ELT(info_R, 4, PROTECT(ScalarLogical(info.has_local_memory)));
      |                                           ^~~~~~~~~~~~~
/home/biocbuild/R/R/include/Rinternals.h:388:36: note: in definition of macro ‘PROTECT’
  388 | #define PROTECT(s)      Rf_protect(s)
      |                                    ^
C_Interface.cpp:41:9: error: ‘unprotect’ was not declared in this scope; did you mean ‘Rf_unprotect’?
   41 |         unprotect(9);
      |         ^~~~~~~~~
      |         Rf_unprotect
C_Interface.cpp: In function ‘SEXPREC* upload(SEXP, SEXP, SEXP, SEXP, SEXP)’:
C_Interface.cpp:48:33: error: ‘asInteger’ was not declared in this scope; did you mean ‘Rf_asInteger’?
   48 |         deviceIdentifier id = { asInteger(platform) ,asInteger(device) };
      |                                 ^~~~~~~~~
      |                                 Rf_asInteger
C_Interface.cpp:50:29: error: ‘asReal’ was not declared in this scope
   50 |         size_t dataLength = asReal(length);
      |                             ^~~~~~
C_Interface.cpp:84:17: error: ‘error’ was not declared in this scope; did you mean ‘perror’?
   84 |                 error("Unsupported data structure!");
      |                 ^~~~~
      |                 perror
C_Interface.cpp: In function ‘SEXPREC* gpuMalloc(SEXP, SEXP, SEXP, SEXP)’:
C_Interface.cpp:96:33: error: ‘asInteger’ was not declared in this scope; did you mean ‘Rf_asInteger’?
   96 |         deviceIdentifier id = { asInteger(platform) ,asInteger(device) };
      |                                 ^~~~~~~~~
      |                                 Rf_asInteger
C_Interface.cpp:97:47: error: ‘asReal’ was not declared in this scope
   97 |         openArray* matrix = new openArray(id, asReal(length), (dtype)asInteger(type));
      |                                               ^~~~~~
C_Interface.cpp: In function ‘SEXPREC* download(SEXP)’:
C_Interface.cpp:121:31: error: ‘allocVector’ was not declared in this scope; did you mean ‘Rf_allocVector’?
  121 |                 res = PROTECT(allocVector(REALSXP, length));
      |                               ^~~~~~~~~~~
/home/biocbuild/R/R/include/Rinternals.h:388:36: note: in definition of macro ‘PROTECT’
  388 | #define PROTECT(s)      Rf_protect(s)
      |                                    ^
C_Interface.cpp: In function ‘SEXPREC* hasKernel(SEXP, SEXP, SEXP, SEXP)’:
C_Interface.cpp:156:33: error: ‘asInteger’ was not declared in this scope; did you mean ‘Rf_asInteger’?
  156 |         deviceIdentifier id = { asInteger(platform) ,asInteger(device) };
      |                                 ^~~~~~~~~
      |                                 Rf_asInteger
C_Interface.cpp:12:33: error: ‘asChar’ was not declared in this scope
   12 | #define asString(x) string(CHAR(asChar(x)))
      |                                 ^~~~~~
/home/biocbuild/R/R/include/Rinternals.h:203:24: note: in definition of macro ‘CHAR’
  203 | #define CHAR(x) R_CHAR(x)
      |                        ^
C_Interface.cpp:157:34: note: in expansion of macro ‘asString’
  157 |         programSignature sig = { asString(signature) ,string(),string(),asString(kernel) };
      |                                  ^~~~~~~~
C_Interface.cpp:158:20: error: ‘ScalarLogical’ was not declared in this scope; did you mean ‘Rf_ScalarLogical’?
  158 |         SEXP res = ScalarLogical(kernelManager::hasKernel(id, sig));
      |                    ^~~~~~~~~~~~~
      |                    Rf_ScalarLogical
C_Interface.cpp: In function ‘SEXPREC* createKernel(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)’:
C_Interface.cpp:166:33: error: ‘asInteger’ was not declared in this scope; did you mean ‘Rf_asInteger’?
  166 |         deviceIdentifier id = { asInteger(platform) ,asInteger(device) };
      |                                 ^~~~~~~~~
      |                                 Rf_asInteger
C_Interface.cpp:12:33: error: ‘asChar’ was not declared in this scope
   12 | #define asString(x) string(CHAR(asChar(x)))
      |                                 ^~~~~~
/home/biocbuild/R/R/include/Rinternals.h:203:24: note: in definition of macro ‘CHAR’
  203 | #define CHAR(x) R_CHAR(x)
      |                        ^
C_Interface.cpp:167:34: note: in expansion of macro ‘asString’
  167 |         programSignature sig = { asString(signature) ,asString(flag),asString(code),asString(kernel) };
      |                                  ^~~~~~~~
C_Interface.cpp: In function ‘SEXPREC* setParameter(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)’:
C_Interface.cpp:178:33: error: ‘asInteger’ was not declared in this scope; did you mean ‘Rf_asInteger’?
  178 |         deviceIdentifier id = { asInteger(platform) ,asInteger(device) };
      |                                 ^~~~~~~~~
      |                                 Rf_asInteger
C_Interface.cpp:12:33: error: ‘asChar’ was not declared in this scope
   12 | #define asString(x) string(CHAR(asChar(x)))
      |                                 ^~~~~~
/home/biocbuild/R/R/include/Rinternals.h:203:24: note: in definition of macro ‘CHAR’
  203 | #define CHAR(x) R_CHAR(x)
      |                        ^
C_Interface.cpp:179:34: note: in expansion of macro ‘asString’
  179 |         programSignature sig = { asString(signature),string(),string(),asString(kernel) };
      |                                  ^~~~~~~~
C_Interface.cpp: In function ‘SEXPREC* setSharedParameter(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)’:
C_Interface.cpp:190:33: error: ‘asInteger’ was not declared in this scope; did you mean ‘Rf_asInteger’?
  190 |         deviceIdentifier id = { asInteger(platform) ,asInteger(device) };
      |                                 ^~~~~~~~~
      |                                 Rf_asInteger
C_Interface.cpp:12:33: error: ‘asChar’ was not declared in this scope
   12 | #define asString(x) string(CHAR(asChar(x)))
      |                                 ^~~~~~
/home/biocbuild/R/R/include/Rinternals.h:203:24: note: in definition of macro ‘CHAR’
  203 | #define CHAR(x) R_CHAR(x)
      |                        ^
C_Interface.cpp:191:34: note: in expansion of macro ‘asString’
  191 |         programSignature sig = { asString(signature),string(),string(),asString(kernel) };
      |                                  ^~~~~~~~
C_Interface.cpp: In function ‘SEXPREC* launchKernel(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)’:
C_Interface.cpp:203:33: error: ‘asInteger’ was not declared in this scope; did you mean ‘Rf_asInteger’?
  203 |         deviceIdentifier id = { asInteger(platform) ,asInteger(device) };
      |                                 ^~~~~~~~~
      |                                 Rf_asInteger
C_Interface.cpp:12:33: error: ‘asChar’ was not declared in this scope
   12 | #define asString(x) string(CHAR(asChar(x)))
      |                                 ^~~~~~
/home/biocbuild/R/R/include/Rinternals.h:203:24: note: in definition of macro ‘CHAR’
  203 | #define CHAR(x) R_CHAR(x)
      |                        ^
C_Interface.cpp:205:34: note: in expansion of macro ‘asString’
  205 |         programSignature sig = { asString(signature),string(),string(),asString(kernel) };
      |                                  ^~~~~~~~
C_Interface.cpp: In function ‘SEXPREC* getPreferredGroupSize(SEXP, SEXP, SEXP, SEXP)’:
C_Interface.cpp:230:33: error: ‘asInteger’ was not declared in this scope; did you mean ‘Rf_asInteger’?
  230 |         deviceIdentifier id = { asInteger(platform) ,asInteger(device) };
      |                                 ^~~~~~~~~
      |                                 Rf_asInteger
C_Interface.cpp:12:33: error: ‘asChar’ was not declared in this scope
   12 | #define asString(x) string(CHAR(asChar(x)))
      |                                 ^~~~~~
/home/biocbuild/R/R/include/Rinternals.h:203:24: note: in definition of macro ‘CHAR’
  203 | #define CHAR(x) R_CHAR(x)
      |                        ^
C_Interface.cpp:231:34: note: in expansion of macro ‘asString’
  231 |         programSignature sig = { asString(signature),string(),string(),asString(kernel) };
      |                                  ^~~~~~~~
C_Interface.cpp:239:20: error: ‘ScalarInteger’ was not declared in this scope; did you mean ‘Rf_ScalarInteger’?
  239 |         SEXP res = ScalarInteger(prefferedSize);
      |                    ^~~~~~~~~~~~~
      |                    Rf_ScalarInteger
C_Interface.cpp: In function ‘SEXPREC* getDeviceStatus(SEXP, SEXP)’:
C_Interface.cpp:246:33: error: ‘asInteger’ was not declared in this scope; did you mean ‘Rf_asInteger’?
  246 |         deviceIdentifier id = { asInteger(platform) ,asInteger(device) };
      |                                 ^~~~~~~~~
      |                                 Rf_asInteger
C_Interface.cpp:252:24: error: ‘ScalarInteger’ was not declared in this scope; did you mean ‘Rf_ScalarInteger’?
  252 |                 return(ScalarInteger(status));
      |                        ^~~~~~~~~~~~~
      |                        Rf_ScalarInteger
C_Interface.cpp:272:16: error: ‘ScalarInteger’ was not declared in this scope; did you mean ‘Rf_ScalarInteger’?
  272 |         return(ScalarInteger(status));
      |                ^~~~~~~~~~~~~
      |                Rf_ScalarInteger
C_Interface.cpp: In function ‘SEXPREC* getTrueAd(SEXP)’:
C_Interface.cpp:281:16: error: ‘ScalarReal’ was not declared in this scope; did you mean ‘Rf_ScalarReal’?
  281 |         return(ScalarReal(ad_double));
      |                ^~~~~~~~~~
      |                Rf_ScalarReal
C_Interface.cpp: In function ‘SEXPREC* asMatrix(SEXP, SEXP)’:
C_Interface.cpp:286:9: error: ‘setAttrib’ was not declared in this scope; did you mean ‘Rf_setAttrib’?
  286 |         setAttrib(data, R_DimSymbol, dim);
      |         ^~~~~~~~~
      |         Rf_setAttrib
C_Interface.cpp: In function ‘SEXPREC* getDeviceFullInfo(SEXP, SEXP)’:
C_Interface.cpp:292:27: error: ‘asInteger’ was not declared in this scope; did you mean ‘Rf_asInteger’?
  292 |   deviceIdentifier id = { asInteger(platform) ,asInteger(device) };
      |                           ^~~~~~~~~
      |                           Rf_asInteger
make: *** [/home/biocbuild/R/R/etc/Makeconf:204: C_Interface.o] Error 1
ERROR: compilation failed for package ‘gpuMagic’
* removing ‘/home/biocbuild/tmp/Rtmp8MHw6r/Rinst30daf44033fe19/gpuMagic’
      -----------------------------------
ERROR: package installation failed