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This page was generated on 2025-09-20 12:04 -0400 (Sat, 20 Sep 2025).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 24.04.3 LTS)x86_644.5.1 Patched (2025-08-23 r88802) -- "Great Square Root" 4814
lconwaymacOS 12.7.1 Montereyx86_644.5.1 Patched (2025-09-10 r88807) -- "Great Square Root" 4603
kjohnson3macOS 13.7.7 Venturaarm644.5.1 Patched (2025-09-10 r88807) -- "Great Square Root" 4547
taishanLinux (openEuler 24.03 LTS)aarch644.5.0 (2025-04-11) -- "How About a Twenty-Six" 4553
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 895/2333HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
goatea 0.99.9  (landing page)
Maurits Unkel
Snapshot Date: 2025-09-19 13:45 -0400 (Fri, 19 Sep 2025)
git_url: https://git.bioconductor.org/packages/goatea
git_branch: devel
git_last_commit: 886d2f3
git_last_commit_date: 2025-08-21 08:09:40 -0400 (Thu, 21 Aug 2025)
nebbiolo2Linux (Ubuntu 24.04.3 LTS) / x86_64  OK    OK    OK  YES
lconwaymacOS 12.7.1 Monterey / x86_64  OK    OK    OK    OK  YES
kjohnson3macOS 13.7.7 Ventura / arm64  OK    OK    OK    OK  YES
taishanLinux (openEuler 24.03 LTS) / aarch64  NA    NA    NA  


CHECK results for goatea on lconway

To the developers/maintainers of the goatea package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/goatea.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: goatea
Version: 0.99.9
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:goatea.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings goatea_0.99.9.tar.gz
StartedAt: 2025-09-19 21:22:33 -0400 (Fri, 19 Sep 2025)
EndedAt: 2025-09-19 21:25:59 -0400 (Fri, 19 Sep 2025)
EllapsedTime: 205.8 seconds
RetCode: 0
Status:   OK  
CheckDir: goatea.Rcheck
Warnings: 0

Command output

##############################################################################
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### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:goatea.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings goatea_0.99.9.tar.gz
###
##############################################################################
##############################################################################


* using log directory ‘/Users/biocbuild/bbs-3.22-bioc/meat/goatea.Rcheck’
* using R version 4.5.1 Patched (2025-09-10 r88807)
* using platform: x86_64-apple-darwin20
* R was compiled by
    Apple clang version 14.0.0 (clang-1400.0.29.202)
    GNU Fortran (GCC) 14.2.0
* running under: macOS Monterey 12.7.6
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘goatea/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘goatea’ version ‘0.99.9’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... INFO
Imports includes 23 non-default packages.
Importing from so many packages makes the package vulnerable to any of
them becoming unavailable.  Move as many as possible to Suggests and
use conditionally.
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘goatea’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking R/sysdata.rda ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: OK


Installation output

goatea.Rcheck/00install.out

##############################################################################
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###
### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL goatea
###
##############################################################################
##############################################################################


* installing to library ‘/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library’
* installing *source* package ‘goatea’ ...
** this is package ‘goatea’ version ‘0.99.9’
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (goatea)

Tests output


Example timings

goatea.Rcheck/goatea-Ex.timings

nameusersystemelapsed
calculate_geneSetRatio0.0760.0060.083
colorify0.0050.0010.006
file_extension0.0000.0000.001
filter_enrichment0.0490.0010.050
get_base_folder0.0000.0010.000
get_ppigraph0.0280.0100.038
get_string_ppi0.0000.0000.001
get_terms_by_keywords0.0000.0010.001
get_visNetwork0.0460.0050.051
hexcolor2rgba0.0020.0000.002
plot_ComplexHeatmap4.0130.1454.183
plot_EnhancedVolcano1.5540.0201.581
plot_gene_effectsize_ComplexHeatmap1.5430.0151.569
plot_genelists_overlap_upsetjs0.0390.0100.052
plot_splitdot0.7440.0070.755
plot_termtree1.5170.0271.554
process_string_input0.0010.0000.000
read_validate_genelist0.0320.0020.035
run_genelists_overlap0.0690.0050.073
run_geneset_enrichment0.2330.0130.248
scale_values_between0.0000.0010.000
set_significant_N_genes0.0100.0040.014
wrap_hovertip0.0020.0000.002
wrap_loader0.0150.0010.016