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This page was generated on 2024-12-23 11:40 -0500 (Mon, 23 Dec 2024).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 24.04.1 LTS)x86_64R Under development (unstable) (2024-10-21 r87258) -- "Unsuffered Consequences" 4754
palomino7Windows Server 2022 Datacenterx64R Under development (unstable) (2024-10-26 r87273 ucrt) -- "Unsuffered Consequences" 4472
lconwaymacOS 12.7.1 Montereyx86_64R Under development (unstable) (2024-11-20 r87352) -- "Unsuffered Consequences" 4426
kjohnson3macOS 13.7.1 Venturaarm64R Under development (unstable) (2024-11-20 r87352) -- "Unsuffered Consequences" 4381
kunpeng2Linux (openEuler 22.03 LTS-SP1)aarch64R Under development (unstable) (2024-11-24 r87369) -- "Unsuffered Consequences" 4372
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 757/2274HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
gaga 2.53.0  (landing page)
David Rossell
Snapshot Date: 2024-12-22 13:40 -0500 (Sun, 22 Dec 2024)
git_url: https://git.bioconductor.org/packages/gaga
git_branch: devel
git_last_commit: 71fadde
git_last_commit_date: 2024-10-29 09:28:29 -0500 (Tue, 29 Oct 2024)
nebbiolo1Linux (Ubuntu 24.04.1 LTS) / x86_64  OK    OK    WARNINGS  UNNEEDED, same version is already published
palomino7Windows Server 2022 Datacenter / x64  OK    OK    WARNINGS    OK  UNNEEDED, same version is already published
lconwaymacOS 12.7.1 Monterey / x86_64  OK    OK    WARNINGS    OK  UNNEEDED, same version is already published
kjohnson3macOS 13.7.1 Ventura / arm64  OK    OK    WARNINGS    OK  UNNEEDED, same version is already published
kunpeng2Linux (openEuler 22.03 LTS-SP1) / aarch64  OK    OK    WARNINGS  


INSTALL results for gaga on nebbiolo1

To the developers/maintainers of the gaga package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/gaga.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: gaga
Version: 2.53.0
Command: /home/biocbuild/bbs-3.21-bioc/R/bin/R CMD INSTALL gaga
StartedAt: 2024-12-22 15:16:12 -0500 (Sun, 22 Dec 2024)
EndedAt: 2024-12-22 15:16:32 -0500 (Sun, 22 Dec 2024)
EllapsedTime: 19.8 seconds
RetCode: 0
Status:   OK  

Command output

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###
### Running command:
###
###   /home/biocbuild/bbs-3.21-bioc/R/bin/R CMD INSTALL gaga
###
##############################################################################
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* installing to library ‘/home/biocbuild/bbs-3.21-bioc/R/site-library’
* installing *source* package ‘gaga’ ...
** using staged installation
** libs
using C compiler: ‘gcc (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0’
gcc -I"/home/biocbuild/bbs-3.21-bioc/R/include" -DNDEBUG   -I/usr/local/include  -DSTRICT_R_HEADERS=1  -fpic  -g -O2  -Wall -c cseqdesma.c -o cseqdesma.o
gcc -I"/home/biocbuild/bbs-3.21-bioc/R/include" -DNDEBUG   -I/usr/local/include  -DSTRICT_R_HEADERS=1  -fpic  -g -O2  -Wall -c cstat.c -o cstat.o
cstat.c: In function ‘free_vector’:
cstat.c:667:20: warning: the comparison will always evaluate as ‘true’ for the pointer operand in ‘v + (sizetype)((long unsigned int)nl * 4)’ must not be NULL [-Waddress]
  667 |         if( (v+nl) != NULL ) free((char  *) (v+nl));
      |                    ^~
cstat.c: In function ‘free_dvector’:
cstat.c:673:20: warning: the comparison will always evaluate as ‘true’ for the pointer operand in ‘v + (sizetype)((long unsigned int)nl * 8)’ must not be NULL [-Waddress]
  673 |         if( (v+nl) != NULL ) free((char  *) (v+nl));
      |                    ^~
cstat.c: In function ‘free_ivector’:
cstat.c:679:20: warning: the comparison will always evaluate as ‘true’ for the pointer operand in ‘v + (sizetype)((long unsigned int)nl * 4)’ must not be NULL [-Waddress]
  679 |         if( (v+nl) != NULL ) free((char  *) (v+nl));
      |                    ^~
cstat.c: In function ‘free_dmatrix’:
cstat.c:687:47: warning: the comparison will always evaluate as ‘true’ for the pointer operand in ‘*(m + (sizetype)((long unsigned int)i * 8)) + (sizetype)((long unsigned int)ncl * 8)’ must not be NULL [-Waddress]
  687 |         for(i=nrh;i>=nrl;i--) {if( (m[i]+ncl) != NULL )
      |                                               ^~
cstat.c:689:21: warning: the comparison will always evaluate as ‘true’ for the pointer operand in ‘m + (sizetype)((long unsigned int)nrl * 8)’ must not be NULL [-Waddress]
  689 |         if( (m+nrl) != NULL ) free((char  *) (m+nrl));
      |                     ^~
cstat.c: In function ‘free_imatrix’:
cstat.c:697:47: warning: the comparison will always evaluate as ‘true’ for the pointer operand in ‘*(m + (sizetype)((long unsigned int)i * 8)) + (sizetype)((long unsigned int)ncl * 4)’ must not be NULL [-Waddress]
  697 |         for(i=nrh;i>=nrl;i--) {if( (m[i]+ncl) != NULL )
      |                                               ^~
cstat.c:699:21: warning: the comparison will always evaluate as ‘true’ for the pointer operand in ‘m + (sizetype)((long unsigned int)nrl * 8)’ must not be NULL [-Waddress]
  699 |         if( (m+nrl) != NULL ) free((char  *) (m+nrl));
      |                     ^~
cstat.c: At top level:
cstat.c:22:19: warning: ‘css_c_sccs_id’ defined but not used [-Wunused-const-variable=]
   22 | static const char css_c_sccs_id[] = "@(#)$Workfile: rand.c$ $Revision: 5$";
      |                   ^~~~~~~~~~~~~
cstat.c:21:19: warning: ‘vector_c_sccs_id’ defined but not used [-Wunused-const-variable=]
   21 | static const char vector_c_sccs_id[] = "%W%";
      |                   ^~~~~~~~~~~~~~~~
cstat.c:20:19: warning: ‘nrutil_c_sccs_id’ defined but not used [-Wunused-const-variable=]
   20 | static const char nrutil_c_sccs_id[] = "%W%";
      |                   ^~~~~~~~~~~~~~~~
cstat.c:19:19: warning: ‘mess_c_sccs_id’ defined but not used [-Wunused-const-variable=]
   19 | static const char mess_c_sccs_id[] = "%W%";
      |                   ^~~~~~~~~~~~~~
cstat.c:18:19: warning: ‘interface_c_sccs_id’ defined but not used [-Wunused-const-variable=]
   18 | static const char interface_c_sccs_id[] = "%W%";
      |                   ^~~~~~~~~~~~~~~~~~~
gcc -shared -L/home/biocbuild/bbs-3.21-bioc/R/lib -L/usr/local/lib -o gaga.so cseqdesma.o cstat.o -L/home/biocbuild/bbs-3.21-bioc/R/lib -lR
installing to /home/biocbuild/bbs-3.21-bioc/R/site-library/00LOCK-gaga/00new/gaga/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (gaga)