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### Running command:
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###   /home/biocbuild/R/R/bin/R CMD INSTALL fraq
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* installing to library ‘/home/biocbuild/R/R-devel_2025-02-19/site-library’
* installing *source* package ‘fraq’ ...
** this is package ‘fraq’ version ‘0.99.2’
** using staged installation
checking for pkg-config... /usr/bin/pkg-config
checking whether the C++ compiler works... yes
checking for C++ compiler default output file name... a.out
checking for suffix of executables... 
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether the compiler supports GNU C++... yes
checking whether /opt/ohpc/pub/compiler/gcc/14.2.0/bin/aarch64-unknown-linux-gnu-g++ -std=gnu++17 accepts -g... yes
checking for /opt/ohpc/pub/compiler/gcc/14.2.0/bin/aarch64-unknown-linux-gnu-g++ -std=gnu++17 option to enable C++11 features... none needed
C++ compiler: /opt/ohpc/pub/compiler/gcc/14.2.0/bin/aarch64-unknown-linux-gnu-g++ -std=gnu++17
zstd 1.5.5 library detected but is lower than bundled version (1.5.2) -- compiling from source
Does not require -latomic flag
configure: creating ./config.status
config.status: creating src/Makevars
** libs
using C++ compiler: ‘aarch64-unknown-linux-gnu-g++ (GCC) 14.2.0’
/opt/ohpc/pub/compiler/gcc/14.2.0/bin/aarch64-unknown-linux-gnu-g++ -std=gnu++17 -I"/home/biocbuild/R/R/include" -DNDEBUG -DRCPP_USE_UNWIND_PROTECT -DRCPP_NO_RTTI -DRCPP_NO_SUGAR -I../inst/include -I. -IZSTD -IZSTD/common -IZSTD/decompress -IZSTD/compress -I'/home/biocbuild/R/R-devel_2025-02-19/site-library/Rcpp/include' -I'/home/biocbuild/R/R-devel_2025-02-19/site-library/RcppParallel/include' -I'/home/biocbuild/R/R-devel_2025-02-19/site-library/edlibR/include' -I/usr/local/include   -DRCPP_PARALLEL_USE_TBB=1  -fPIC  -g -O2  -Wall -Werror=format-security  -c RcppExports.cpp -o RcppExports.o
/opt/ohpc/pub/compiler/gcc/14.2.0/bin/aarch64-unknown-linux-gnu-g++ -std=gnu++17 -I"/home/biocbuild/R/R/include" -DNDEBUG -DRCPP_USE_UNWIND_PROTECT -DRCPP_NO_RTTI -DRCPP_NO_SUGAR -I../inst/include -I. -IZSTD -IZSTD/common -IZSTD/decompress -IZSTD/compress -I'/home/biocbuild/R/R-devel_2025-02-19/site-library/Rcpp/include' -I'/home/biocbuild/R/R-devel_2025-02-19/site-library/RcppParallel/include' -I'/home/biocbuild/R/R-devel_2025-02-19/site-library/edlibR/include' -I/usr/local/include   -DRCPP_PARALLEL_USE_TBB=1  -fPIC  -g -O2  -Wall -Werror=format-security  -c fraq_functions.cpp -o fraq_functions.o
In file included from /home/biocbuild/R/R-devel_2025-02-19/site-library/RcppParallel/include/tbb/flow_graph.h:21,
                 from fraq_run_graph.h:17,
                 from fraq_functions.cpp:4:
/home/biocbuild/R/R-devel_2025-02-19/site-library/RcppParallel/include/tbb/atomic.h: In instantiation of ‘tbb::atomic<T>& tbb::internal::as_atomic(T&) [with T = long unsigned int]’:
/home/biocbuild/R/R-devel_2025-02-19/site-library/RcppParallel/include/tbb/tbb_thread.h:251:29:   required from here
  251 |             return as_atomic(location.my_id).compare_and_swap(value.my_id, comparand.my_id);
      |                    ~~~~~~~~~^~~~~~~~~~~~~~~~
/home/biocbuild/R/R-devel_2025-02-19/site-library/RcppParallel/include/tbb/atomic.h:544:12: warning: casting ‘long unsigned int’ to ‘tbb::atomic<long unsigned int>&’ does not use ‘constexpr tbb::atomic<long unsigned int>::atomic(long unsigned int)’ [-Wcast-user-defined]
  544 |     return (atomic<T>&)t;
      |            ^~~~~~~~~~~~~
/home/biocbuild/R/R-devel_2025-02-19/site-library/RcppParallel/include/tbb/atomic.h: In instantiation of ‘tbb::atomic<T>& tbb::internal::as_atomic(T&) [with T = tbb::interface5::internal::split_ordered_list<std::pair<const long unsigned int, fraq_internal::CompressedReadBlock>, tbb::tbb_allocator<std::pair<const long unsigned int, fraq_internal::CompressedReadBlock> > >::node*]’:
/home/biocbuild/R/R-devel_2025-02-19/site-library/RcppParallel/include/tbb/internal/_concurrent_unordered_impl.h:249:63:   required from ‘tbb::interface5::internal::split_ordered_list<T, Allocator>::node* tbb::interface5::internal::split_ordered_list<T, Allocator>::node::atomic_set_next(tbb::interface5::internal::split_ordered_list<T, Allocator>::nodeptr_t, tbb::interface5::internal::split_ordered_list<T, Allocator>::nodeptr_t) [with T = std::pair<const long unsigned int, fraq_internal::CompressedReadBlock>; Allocator = tbb::tbb_allocator<std::pair<const long unsigned int, fraq_internal::CompressedReadBlock> >; tbb::interface5::internal::split_ordered_list<T, Allocator>::nodeptr_t = tbb::interface5::internal::split_ordered_list<std::pair<const long unsigned int, fraq_internal::CompressedReadBlock>, tbb::tbb_allocator<std::pair<const long unsigned int, fraq_internal::CompressedReadBlock> > >::node*]’
  249 |             nodeptr_t exchange_node = tbb::internal::as_atomic(my_next).compare_and_swap(new_node, current_node);
      |                                       ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~
/home/biocbuild/R/R-devel_2025-02-19/site-library/RcppParallel/include/tbb/internal/_concurrent_unordered_impl.h:510:41:   required from ‘static tbb::interface5::internal::split_ordered_list<T, Allocator>::node* tbb::interface5::internal::split_ordered_list<T, Allocator>::try_insert_atomic(nodeptr_t, nodeptr_t, nodeptr_t) [with T = std::pair<const long unsigned int, fraq_internal::CompressedReadBlock>; Allocator = tbb::tbb_allocator<std::pair<const long unsigned int, fraq_internal::CompressedReadBlock> >; nodeptr_t = tbb::interface5::internal::split_ordered_list<std::pair<const long unsigned int, fraq_internal::CompressedReadBlock>, tbb::tbb_allocator<std::pair<const long unsigned int, fraq_internal::CompressedReadBlock> > >::node*]’
  510 |         return previous->atomic_set_next(new_node, current_node);
      |                ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/home/biocbuild/R/R-devel_2025-02-19/site-library/RcppParallel/include/tbb/internal/_concurrent_unordered_impl.h:516:52:   required from ‘std::pair<tbb::interface5::internal::solist_iterator<tbb::interface5::internal::split_ordered_list<T, Allocator>, typename std::allocator_traits<typename tbb::internal::allocator_rebind<Allocator, T>::type>::value_type>, bool> tbb::interface5::internal::split_ordered_list<T, Allocator>::try_insert(raw_iterator, raw_iterator, nodeptr_t, size_type*) [with T = std::pair<const long unsigned int, fraq_internal::CompressedReadBlock>; Allocator = tbb::tbb_allocator<std::pair<const long unsigned int, fraq_internal::CompressedReadBlock> >; typename std::allocator_traits<typename tbb::internal::allocator_rebind<Allocator, T>::type>::value_type = std::pair<const long unsigned int, fraq_internal::CompressedReadBlock>; typename tbb::internal::allocator_rebind<Allocator, T>::type = std::allocator_traits<tbb::tbb_allocator<std::pair<const long unsigned int, fraq_internal::CompressedReadBlock> > >::rebind_alloc<std::pair<const long unsigned int, fraq_internal::CompressedReadBlock> >; raw_iterator = tbb::interface5::internal::flist_iterator<tbb::interface5::internal::split_ordered_list<std::pair<const long unsigned int, fraq_internal::CompressedReadBlock>, tbb::tbb_allocator<std::pair<const long unsigned int, fraq_internal::CompressedReadBlock> > >, std::pair<const long unsigned int, fraq_internal::CompressedReadBlock> >; nodeptr_t = tbb::interface5::internal::split_ordered_list<std::pair<const long unsigned int, fraq_internal::CompressedReadBlock>, tbb::tbb_allocator<std::pair<const long unsigned int, fraq_internal::CompressedReadBlock> > >::node*; size_type = long unsigned int]’
  516 |         nodeptr_t inserted_node = try_insert_atomic(it.get_node_ptr(), pnode, next.get_node_ptr());
      |                                   ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/home/biocbuild/R/R-devel_2025-02-19/site-library/RcppParallel/include/tbb/internal/_concurrent_unordered_impl.h:1420:72:   required from ‘std::pair<typename tbb::interface5::internal::split_ordered_list<typename Traits::value_type, typename Traits::allocator_type>::iterator, bool> tbb::interface5::internal::concurrent_unordered_base<Traits>::internal_insert(ValueType&&, nodeptr_t) [with AllowCreate = tbb::internal::bool_constant<false>; AllowDestroy = tbb::internal::bool_constant<true>; ValueType = std::pair<const long unsigned int, fraq_internal::CompressedReadBlock>&; Traits = tbb::interface5::concurrent_unordered_map_traits<long unsigned int, fraq_internal::CompressedReadBlock, tbb::interface5::internal::hash_compare<long unsigned int, tbb::tbb_hash<long unsigned int>, std::equal_to<long unsigned int> >, tbb::tbb_allocator<std::pair<const long unsigned int, fraq_internal::CompressedReadBlock> >, false>; typename tbb::interface5::internal::split_ordered_list<typename Traits::value_type, typename Traits::allocator_type>::iterator = tbb::interface5::internal::solist_iterator<tbb::interface5::internal::split_ordered_list<std::pair<const long unsigned int, fraq_internal::CompressedReadBlock>, tbb::tbb_allocator<std::pair<const long unsigned int, fraq_internal::CompressedReadBlock> > >, std::pair<const long unsigned int, fraq_internal::CompressedReadBlock> >; typename Traits::value_type = std::pair<const long unsigned int, fraq_internal::CompressedReadBlock>; typename Traits::allocator_type = std::allocator_traits<tbb::tbb_allocator<std::pair<const long unsigned int, fraq_internal::CompressedReadBlock> > >::rebind_alloc<std::pair<const long unsigned int, fraq_internal::CompressedReadBlock> >; nodeptr_t = tbb::interface5::internal::split_ordered_list<std::pair<const long unsigned int, fraq_internal::CompressedReadBlock>, tbb::tbb_allocator<std::pair<const long unsigned int, fraq_internal::CompressedReadBlock> > >::node*]’
 1420 |                 std::pair<iterator, bool> result = my_solist.try_insert(previous, where, pnode, &new_count);
      |                                                    ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/home/biocbuild/R/R-devel_2025-02-19/site-library/RcppParallel/include/tbb/internal/_concurrent_unordered_impl.h:1101:74:   required from ‘std::pair<typename tbb::interface5::internal::split_ordered_list<typename Traits::value_type, typename Traits::allocator_type>::iterator, bool> tbb::interface5::internal::concurrent_unordered_base<Traits>::emplace(Args&& ...) [with Args = {long unsigned int&, fraq_internal::CompressedReadBlock}; Traits = tbb::interface5::concurrent_unordered_map_traits<long unsigned int, fraq_internal::CompressedReadBlock, tbb::interface5::internal::hash_compare<long unsigned int, tbb::tbb_hash<long unsigned int>, std::equal_to<long unsigned int> >, tbb::tbb_allocator<std::pair<const long unsigned int, fraq_internal::CompressedReadBlock> >, false>; typename tbb::interface5::internal::split_ordered_list<typename Traits::value_type, typename Traits::allocator_type>::iterator = tbb::interface5::internal::solist_iterator<tbb::interface5::internal::split_ordered_list<std::pair<const long unsigned int, fraq_internal::CompressedReadBlock>, tbb::tbb_allocator<std::pair<const long unsigned int, fraq_internal::CompressedReadBlock> > >, std::pair<const long unsigned int, fraq_internal::CompressedReadBlock> >; typename Traits::value_type = std::pair<const long unsigned int, fraq_internal::CompressedReadBlock>; typename Traits::allocator_type = std::allocator_traits<tbb::tbb_allocator<std::pair<const long unsigned int, fraq_internal::CompressedReadBlock> > >::rebind_alloc<std::pair<const long unsigned int, fraq_internal::CompressedReadBlock> >]’
 1100 |         return internal_insert</*AllowCreate=*/tbb::internal::false_type,
      |                ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 
 1101 |                                /*AllowDestroy=*/tbb::internal::true_type>(pnode->my_element, pnode);
      |                                ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~
fraq_run_graph.h:179:30:   required from here
  179 |     compressed_blocks.emplace(index, std::move(compressed_block));
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/home/biocbuild/R/R-devel_2025-02-19/site-library/RcppParallel/include/tbb/atomic.h:544:12: warning: casting ‘tbb::interface5::internal::split_ordered_list<std::pair<const long unsigned int, fraq_internal::CompressedReadBlock>, tbb::tbb_allocator<std::pair<const long unsigned int, fraq_internal::CompressedReadBlock> > >::node*’ to ‘tbb::atomic<tbb::interface5::internal::split_ordered_list<std::pair<const long unsigned int, fraq_internal::CompressedReadBlock>, tbb::tbb_allocator<std::pair<const long unsigned int, fraq_internal::CompressedReadBlock> > >::node*>&’ does not use ‘constexpr tbb::atomic<T*>::atomic(T*) [with T = tbb::interface5::internal::split_ordered_list<std::pair<const long unsigned int, fraq_internal::CompressedReadBlock>, tbb::tbb_allocator<std::pair<const long unsigned int, fraq_internal::CompressedReadBlock> > >::node]’ [-Wcast-user-defined]
  544 |     return (atomic<T>&)t;
      |            ^~~~~~~~~~~~~
/opt/ohpc/pub/compiler/gcc/14.2.0/bin/aarch64-unknown-linux-gnu-gcc -std=gnu23 -I"/home/biocbuild/R/R/include" -DNDEBUG -DRCPP_USE_UNWIND_PROTECT -DRCPP_NO_RTTI -DRCPP_NO_SUGAR -I../inst/include -I. -IZSTD -IZSTD/common -IZSTD/decompress -IZSTD/compress -I'/home/biocbuild/R/R-devel_2025-02-19/site-library/Rcpp/include' -I'/home/biocbuild/R/R-devel_2025-02-19/site-library/RcppParallel/include' -I'/home/biocbuild/R/R-devel_2025-02-19/site-library/edlibR/include' -I/usr/local/include    -fPIC  -g -O2  -Wall -Werror=format-security -c ZSTD/zstd.c -o ZSTD/zstd.o
ar rcs libQSZSTD.a ZSTD/zstd.o
/opt/ohpc/pub/compiler/gcc/14.2.0/bin/aarch64-unknown-linux-gnu-g++ -std=gnu++17 -shared -L/home/biocbuild/R/R/lib -L/usr/local/lib -o fraq.so RcppExports.o fraq_functions.o -L. -lQSZSTD -L/home/biocbuild/R/R/lib -lR
installing to /home/biocbuild/R/R-devel_2025-02-19/site-library/00LOCK-fraq/00new/fraq/libs
** R
** inst
** byte-compile and prepare package for lazy loading
Error: class "Seqinfo" is not exported by 'namespace:GenomeInfoDb'
Execution halted
ERROR: lazy loading failed for package ‘fraq’
* removing ‘/home/biocbuild/R/R-devel_2025-02-19/site-library/fraq’