Back to Multiple platform build/check report for BioC 3.21: simplified long |
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This page was generated on 2024-12-24 11:40 -0500 (Tue, 24 Dec 2024).
Hostname | OS | Arch (*) | R version | Installed pkgs |
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nebbiolo1 | Linux (Ubuntu 24.04.1 LTS) | x86_64 | R Under development (unstable) (2024-10-21 r87258) -- "Unsuffered Consequences" | 4754 |
palomino7 | Windows Server 2022 Datacenter | x64 | R Under development (unstable) (2024-10-26 r87273 ucrt) -- "Unsuffered Consequences" | 4472 |
lconway | macOS 12.7.1 Monterey | x86_64 | R Under development (unstable) (2024-11-20 r87352) -- "Unsuffered Consequences" | 4426 |
kjohnson3 | macOS 13.7.1 Ventura | arm64 | R Under development (unstable) (2024-11-20 r87352) -- "Unsuffered Consequences" | 4381 |
kunpeng2 | Linux (openEuler 22.03 LTS-SP1) | aarch64 | R Under development (unstable) (2024-11-24 r87369) -- "Unsuffered Consequences" | 4373 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
Package 744/2274 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
fmrs 1.17.0 (landing page) Farhad Shokoohi
| nebbiolo1 | Linux (Ubuntu 24.04.1 LTS) / x86_64 | OK | OK | OK | |||||||||
palomino7 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | |||||||||
lconway | macOS 12.7.1 Monterey / x86_64 | OK | OK | OK | OK | |||||||||
kjohnson3 | macOS 13.7.1 Ventura / arm64 | OK | OK | OK | OK | |||||||||
kunpeng2 | Linux (openEuler 22.03 LTS-SP1) / aarch64 | OK | OK | OK | ||||||||||
To the developers/maintainers of the fmrs package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/fmrs.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
Package: fmrs |
Version: 1.17.0 |
Command: /home/biocbuild/bbs-3.21-bioc/R/bin/R CMD check --install=check:fmrs.install-out.txt --library=/home/biocbuild/bbs-3.21-bioc/R/site-library --timings fmrs_1.17.0.tar.gz |
StartedAt: 2024-12-23 22:07:51 -0500 (Mon, 23 Dec 2024) |
EndedAt: 2024-12-23 22:08:34 -0500 (Mon, 23 Dec 2024) |
EllapsedTime: 43.1 seconds |
RetCode: 0 |
Status: OK |
CheckDir: fmrs.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.21-bioc/R/bin/R CMD check --install=check:fmrs.install-out.txt --library=/home/biocbuild/bbs-3.21-bioc/R/site-library --timings fmrs_1.17.0.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/home/biocbuild/bbs-3.21-bioc/meat/fmrs.Rcheck’ * using R Under development (unstable) (2024-10-21 r87258) * using platform: x86_64-pc-linux-gnu * R was compiled by gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0 GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0 * running under: Ubuntu 24.04.1 LTS * using session charset: UTF-8 * checking for file ‘fmrs/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘fmrs’ version ‘1.17.0’ * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘fmrs’ can be installed ... OK * used C compiler: ‘gcc (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0’ * checking installed package size ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking loading without being on the library search path ... OK * checking whether startup messages can be suppressed ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking line endings in C/C++/Fortran sources/headers ... OK * checking compiled code ... NOTE Note: information on .o files is not available * checking installed files from ‘inst/doc’ ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK * checking for unstated dependencies in ‘tests’ ... OK * checking tests ... Running ‘testthat.R’ OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes ... OK * checking re-building of vignette outputs ... OK * checking PDF version of manual ... OK * DONE Status: 1 NOTE See ‘/home/biocbuild/bbs-3.21-bioc/meat/fmrs.Rcheck/00check.log’ for details.
fmrs.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.21-bioc/R/bin/R CMD INSTALL fmrs ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.21-bioc/R/site-library’ * installing *source* package ‘fmrs’ ... ** using staged installation ** libs using C compiler: ‘gcc (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0’ gcc -I"/home/biocbuild/bbs-3.21-bioc/R/include" -DNDEBUG -I/usr/local/include -DSTRICT_R_HEADERS=1 -fpic -g -O2 -Wall -c fmrs.c -o fmrs.o fmrs.c: In function ‘FMR_Weibl_MLE’: fmrs.c:1497:12: warning: variable ‘multX’ set but not used [-Wunused-but-set-variable] 1497 | double multX[N][D][K]; | ^~~~~ fmrs.c: In function ‘FMR_Weibl_CTun’: fmrs.c:2566:12: warning: variable ‘pi_new’ set but not used [-Wunused-but-set-variable] 2566 | double pi_new[K]; | ^~~~~~ fmrs.c:2547:12: warning: variable ‘multX’ set but not used [-Wunused-but-set-variable] 2547 | double multX[N][D][k1]; | ^~~~~ fmrs.c: In function ‘Norm_MLE’: fmrs.c:2981:10: warning: variable ‘sumwi’ set but not used [-Wunused-but-set-variable] 2981 | double sumwi[K]; | ^~~~~ fmrs.c: In function ‘Weibl_MLE’: fmrs.c:4056:10: warning: variable ‘multX’ set but not used [-Wunused-but-set-variable] 4056 | double multX[N][D][K]; | ^~~~~ fmrs.c: In function ‘Weibl_CTun’: fmrs.c:5031:10: warning: variable ‘select’ set but not used [-Wunused-but-set-variable] 5031 | double select[D][K]; | ^~~~~~ fmrs.c:5007:10: warning: variable ‘multX’ set but not used [-Wunused-but-set-variable] 5007 | double multX[N][D][k1]; | ^~~~~ fmrs.c: In function ‘backsub’: fmrs.c:59:26: warning: ‘*atemp[<unknown>][n]’ may be used uninitialized [-Wmaybe-uninitialized] 59 | y[n-1] = atemp[n - 1][n] / atemp[n - 1][n - 1]; | ~~~~~~~~~~~~^~~ fmrs.c:59:44: warning: ‘*atemp[<unknown>][<unknown>]’ may be used uninitialized [-Wmaybe-uninitialized] 59 | y[n-1] = atemp[n - 1][n] / atemp[n - 1][n - 1]; | ~~~~~~~~~~~~^~~~~~~ gcc -shared -L/home/biocbuild/bbs-3.21-bioc/R/lib -L/usr/local/lib -o fmrs.so fmrs.o -L/home/biocbuild/bbs-3.21-bioc/R/lib -lR installing to /home/biocbuild/bbs-3.21-bioc/R/site-library/00LOCK-fmrs/00new/fmrs/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (fmrs)
fmrs.Rcheck/tests/testthat.Rout
R Under development (unstable) (2024-10-21 r87258) -- "Unsuffered Consequences" Copyright (C) 2024 The R Foundation for Statistical Computing Platform: x86_64-pc-linux-gnu R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. Type 'license()' or 'licence()' for distribution details. R is a collaborative project with many contributors. Type 'contributors()' for more information and 'citation()' on how to cite R or R packages in publications. Type 'demo()' for some demos, 'help()' for on-line help, or 'help.start()' for an HTML browser interface to help. Type 'q()' to quit R. > library(testthat) > library(fmrs) BugReports: https://github.com/shokoohi/fmrs/issues > > test_check("fmrs") [ FAIL 0 | WARN 0 | SKIP 0 | PASS 1 ] > > proc.time() user system elapsed 1.467 0.117 1.575
fmrs.Rcheck/fmrs-Ex.timings
name | user | system | elapsed | |
BIC-methods | 0.051 | 0.006 | 0.057 | |
coefficients-methods | 0.576 | 0.011 | 0.587 | |
dispersion-methods | 0.043 | 0.004 | 0.047 | |
fitted-methods | 0.043 | 0.001 | 0.043 | |
fmrs.gendata-methods | 0.011 | 0.000 | 0.010 | |
fmrs.mle-methods | 0.045 | 0.002 | 0.046 | |
fmrs.tunsel-methods | 0.126 | 0.002 | 0.128 | |
fmrs.varsel-methods | 0.268 | 0.001 | 0.270 | |
logLik-methods | 0.043 | 0.000 | 0.044 | |
mixProp-methods | 0.043 | 0.000 | 0.043 | |
ncomp-methods | 0.043 | 0.000 | 0.043 | |
ncov-methods | 0.042 | 0.000 | 0.043 | |
nobs-methods | 0.042 | 0.001 | 0.042 | |
residuals-methods | 0.043 | 0.000 | 0.043 | |
summary-methods | 0.128 | 0.002 | 0.129 | |
weights-methods | 0.040 | 0.005 | 0.045 | |