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This page was generated on 2024-12-24 11:46 -0500 (Tue, 24 Dec 2024).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 24.04.1 LTS)x86_64R Under development (unstable) (2024-10-21 r87258) -- "Unsuffered Consequences" 4754
palomino7Windows Server 2022 Datacenterx64R Under development (unstable) (2024-10-26 r87273 ucrt) -- "Unsuffered Consequences" 4472
lconwaymacOS 12.7.1 Montereyx86_64R Under development (unstable) (2024-11-20 r87352) -- "Unsuffered Consequences" 4426
kjohnson3macOS 13.7.1 Venturaarm64R Under development (unstable) (2024-11-20 r87352) -- "Unsuffered Consequences" 4381
kunpeng2Linux (openEuler 22.03 LTS-SP1)aarch64R Under development (unstable) (2024-11-24 r87369) -- "Unsuffered Consequences" 4373
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 742/2274HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
flowWorkspace 4.19.0  (landing page)
Greg Finak , Mike Jiang
Snapshot Date: 2024-12-23 13:40 -0500 (Mon, 23 Dec 2024)
git_url: https://git.bioconductor.org/packages/flowWorkspace
git_branch: devel
git_last_commit: 586e9e6
git_last_commit_date: 2024-10-29 09:37:06 -0500 (Tue, 29 Oct 2024)
nebbiolo1Linux (Ubuntu 24.04.1 LTS) / x86_64  OK    OK    WARNINGS  UNNEEDED, same version is already published
palomino7Windows Server 2022 Datacenter / x64  OK    OK    WARNINGS    OK  UNNEEDED, same version is already published
lconwaymacOS 12.7.1 Monterey / x86_64  OK    OK    WARNINGS    OK  UNNEEDED, same version is already published
kjohnson3macOS 13.7.1 Ventura / arm64  OK    OK    WARNINGS    OK  UNNEEDED, same version is already published
kunpeng2Linux (openEuler 22.03 LTS-SP1) / aarch64  OK    OK    WARNINGS  

INSTALL results for flowWorkspace on kunpeng2

To the developers/maintainers of the flowWorkspace package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/flowWorkspace.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.
- See Martin Grigorov's blog post for how to debug Linux ARM64 related issues on a x86_64 host.

raw results


Summary

Package: flowWorkspace
Version: 4.19.0
Command: /home/biocbuild/R/R/bin/R CMD INSTALL flowWorkspace
StartedAt: 2024-12-23 19:35:05 -0000 (Mon, 23 Dec 2024)
EndedAt: 2024-12-23 19:38:27 -0000 (Mon, 23 Dec 2024)
EllapsedTime: 202.1 seconds
RetCode: 0
Status:   OK  

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/R/R/bin/R CMD INSTALL flowWorkspace
###
##############################################################################
##############################################################################


* installing to library ‘/home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library’
* installing *source* package ‘flowWorkspace’ ...
** using staged installation
** libs
using C++ compiler: ‘aarch64-unknown-linux-gnu-g++ (GCC) 14.2.0’
using C++17
/opt/ohpc/pub/compiler/gcc/14.2.0/bin/aarch64-unknown-linux-gnu-g++ -std=gnu++17 -I"/home/biocbuild/R/R/include" -DNDEBUG -DROUT -I../inst/include -DBOOST_NO_AUTO_PTR -Wno-pedantic  -w -Wfatal-errors -I'/home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library/cpp11/include' -I'/home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library/BH/include' -I'/home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library/RProtoBufLib/include' -I'/home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library/cytolib/include' -I'/home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library/Rhdf5lib/include' -I/usr/local/include    -fPIC  -g -O2  -Wall -Werror=format-security -DR_NO_REMAP -c R_API.cpp -o R_API.o
In file included from /home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library/cytolib/include/cytolib/GatingHierarchy.hpp:21,
                 from /home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library/cytolib/include/cytolib/GatingSet.hpp:14,
                 from R_API.cpp:9:
/home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library/cytolib/include/cytolib/CytoFrameView.hpp: In member function ‘std::pair<double, double> cytolib::CytoFrameView::get_range(const std::string&, cytolib::ColType, cytolib::RangeType) const’:
/home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library/cytolib/include/cytolib/CytoFrameView.hpp:260:9: note: parameter passing for argument of type ‘std::pair<double, double>’ when C++17 is enabled changed to match C++14 in GCC 10.1
  260 |         {
      |         ^
/opt/ohpc/pub/compiler/gcc/14.2.0/bin/aarch64-unknown-linux-gnu-g++ -std=gnu++17 -I"/home/biocbuild/R/R/include" -DNDEBUG -DROUT -I../inst/include -DBOOST_NO_AUTO_PTR -Wno-pedantic  -w -Wfatal-errors -I'/home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library/cpp11/include' -I'/home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library/BH/include' -I'/home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library/RProtoBufLib/include' -I'/home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library/cytolib/include' -I'/home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library/Rhdf5lib/include' -I/usr/local/include    -fPIC  -g -O2  -Wall -Werror=format-security -DR_NO_REMAP -c R_GatingHierarchy.cpp -o R_GatingHierarchy.o
In file included from /home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library/cytolib/include/cytolib/GatingHierarchy.hpp:21,
                 from /home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library/cytolib/include/cytolib/GatingSet.hpp:14,
                 from R_GatingHierarchy.cpp:18:
/home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library/cytolib/include/cytolib/CytoFrameView.hpp: In member function ‘std::pair<double, double> cytolib::CytoFrameView::get_range(const std::string&, cytolib::ColType, cytolib::RangeType) const’:
/home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library/cytolib/include/cytolib/CytoFrameView.hpp:260:9: note: parameter passing for argument of type ‘std::pair<double, double>’ when C++17 is enabled changed to match C++14 in GCC 10.1
  260 |         {
      |         ^
In file included from /opt/ohpc/pub/compiler/gcc/14.2.0/include/c++/14.2.0/bits/stl_algobase.h:64,
                 from /opt/ohpc/pub/compiler/gcc/14.2.0/include/c++/14.2.0/bits/specfun.h:43,
                 from /opt/ohpc/pub/compiler/gcc/14.2.0/include/c++/14.2.0/cmath:3898,
                 from /home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library/cpp11/include/cpp11/as.hpp:3,
                 from /home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library/cpp11/include/cpp11.hpp:5,
                 from R_GatingHierarchy.cpp:16:
/opt/ohpc/pub/compiler/gcc/14.2.0/include/c++/14.2.0/bits/stl_pair.h: In instantiation of ‘constexpr std::pair<typename std::__strip_reference_wrapper<typename std::decay<_Tp>::type>::__type, typename std::__strip_reference_wrapper<typename std::decay<_Tp2>::type>::__type> std::make_pair(_T1&&, _T2&&) [with _T1 = float; _T2 = float; typename __strip_reference_wrapper<typename decay<_Tp>::type>::__type = float; typename decay<_Tp>::type = float; typename __strip_reference_wrapper<typename decay<_Tp2>::type>::__type = float; typename decay<_Tp2>::type = float]’:
R_GatingHierarchy.cpp:824:22:   required from here
  824 |               std::make_pair(static_cast<float>(ranges_input.at(i)),
      |               ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  825 |                       static_cast<float>(ranges_input.at(i + 1))));
      |                       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/opt/ohpc/pub/compiler/gcc/14.2.0/include/c++/14.2.0/bits/stl_pair.h:1132:5: note: parameter passing for argument of type ‘std::pair<float, float>’ when C++17 is enabled changed to match C++14 in GCC 10.1
 1132 |     make_pair(_T1&& __x, _T2&& __y)
      |     ^~~~~~~~~
In file included from /home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library/cytolib/include/cytolib/CytoFrameView.hpp:13:
/home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library/cytolib/include/cytolib/H5CytoFrame.hpp: In member function ‘virtual void cytolib::H5CytoFrame::set_range(const std::string&, cytolib::ColType, std::pair<double, double>, bool)’:
/home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library/cytolib/include/cytolib/H5CytoFrame.hpp:204:14: note: parameter passing for argument of type ‘std::pair<double, double>’ when C++17 is enabled changed to match C++14 in GCC 10.1
  204 |         void set_range(const string & colname, ColType ctype, pair<EVENT_DATA_TYPE, EVENT_DATA_TYPE> new_range, bool is_update_keywords = true){
      |              ^~~~~~~~~
R_GatingHierarchy.cpp: In function ‘cytolib::gatePtr newGate(cpp11::list)’:
R_GatingHierarchy.cpp:824:29: note: parameter passing for argument of type ‘std::pair<float, float>’ when C++17 is enabled changed to match C++14 in GCC 10.1
  824 |               std::make_pair(static_cast<float>(ranges_input.at(i)),
      |               ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  825 |                       static_cast<float>(ranges_input.at(i + 1))));
      |                       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/opt/ohpc/pub/compiler/gcc/14.2.0/bin/aarch64-unknown-linux-gnu-g++ -std=gnu++17 -I"/home/biocbuild/R/R/include" -DNDEBUG -DROUT -I../inst/include -DBOOST_NO_AUTO_PTR -Wno-pedantic  -w -Wfatal-errors -I'/home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library/cpp11/include' -I'/home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library/BH/include' -I'/home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library/RProtoBufLib/include' -I'/home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library/cytolib/include' -I'/home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library/Rhdf5lib/include' -I/usr/local/include    -fPIC  -g -O2  -Wall -Werror=format-security -DR_NO_REMAP -c R_GatingSet.cpp -o R_GatingSet.o
In file included from flowWorkspace_types.h:7,
                 from R_GatingSet.cpp:10:
/home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library/cytolib/include/cytolib/CytoFrameView.hpp: In member function ‘std::pair<double, double> cytolib::CytoFrameView::get_range(const std::string&, cytolib::ColType, cytolib::RangeType) const’:
/home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library/cytolib/include/cytolib/CytoFrameView.hpp:260:9: note: parameter passing for argument of type ‘std::pair<double, double>’ when C++17 is enabled changed to match C++14 in GCC 10.1
  260 |         {
      |         ^
/opt/ohpc/pub/compiler/gcc/14.2.0/bin/aarch64-unknown-linux-gnu-g++ -std=gnu++17 -I"/home/biocbuild/R/R/include" -DNDEBUG -DROUT -I../inst/include -DBOOST_NO_AUTO_PTR -Wno-pedantic  -w -Wfatal-errors -I'/home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library/cpp11/include' -I'/home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library/BH/include' -I'/home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library/RProtoBufLib/include' -I'/home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library/cytolib/include' -I'/home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library/Rhdf5lib/include' -I/usr/local/include    -fPIC  -g -O2  -Wall -Werror=format-security -DR_NO_REMAP -c cpp11.cpp -o cpp11.o
In file included from flowWorkspace_types.h:7,
                 from cpp11.cpp:4:
/home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library/cytolib/include/cytolib/CytoFrameView.hpp: In member function ‘std::pair<double, double> cytolib::CytoFrameView::get_range(const std::string&, cytolib::ColType, cytolib::RangeType) const’:
/home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library/cytolib/include/cytolib/CytoFrameView.hpp:260:9: note: parameter passing for argument of type ‘std::pair<double, double>’ when C++17 is enabled changed to match C++14 in GCC 10.1
  260 |         {
      |         ^
/opt/ohpc/pub/compiler/gcc/14.2.0/bin/aarch64-unknown-linux-gnu-g++ -std=gnu++17 -I"/home/biocbuild/R/R/include" -DNDEBUG -DROUT -I../inst/include -DBOOST_NO_AUTO_PTR -Wno-pedantic  -w -Wfatal-errors -I'/home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library/cpp11/include' -I'/home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library/BH/include' -I'/home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library/RProtoBufLib/include' -I'/home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library/cytolib/include' -I'/home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library/Rhdf5lib/include' -I/usr/local/include    -fPIC  -g -O2  -Wall -Werror=format-security -DR_NO_REMAP -c cytoframeAPI.cpp -o cytoframeAPI.o
In file included from cytoframeAPI.cpp:5:
/home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library/cytolib/include/cytolib/CytoFrameView.hpp: In member function ‘std::pair<double, double> cytolib::CytoFrameView::get_range(const std::string&, cytolib::ColType, cytolib::RangeType) const’:
/home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library/cytolib/include/cytolib/CytoFrameView.hpp:260:9: note: parameter passing for argument of type ‘std::pair<double, double>’ when C++17 is enabled changed to match C++14 in GCC 10.1
  260 |         {
      |         ^
/opt/ohpc/pub/compiler/gcc/14.2.0/bin/aarch64-unknown-linux-gnu-g++ -std=gnu++17 -I"/home/biocbuild/R/R/include" -DNDEBUG -DROUT -I../inst/include -DBOOST_NO_AUTO_PTR -Wno-pedantic  -w -Wfatal-errors -I'/home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library/cpp11/include' -I'/home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library/BH/include' -I'/home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library/RProtoBufLib/include' -I'/home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library/cytolib/include' -I'/home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library/Rhdf5lib/include' -I/usr/local/include    -fPIC  -g -O2  -Wall -Werror=format-security -DR_NO_REMAP -c cytosetAPI.cpp -o cytosetAPI.o
In file included from /home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library/cytolib/include/cytolib/GatingHierarchy.hpp:21,
                 from /home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library/cytolib/include/cytolib/GatingSet.hpp:14,
                 from ../inst/include/flowWorkspace/pairVectorCpp11Convert.h:12,
                 from cytosetAPI.cpp:2:
/home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library/cytolib/include/cytolib/CytoFrameView.hpp: In member function ‘std::pair<double, double> cytolib::CytoFrameView::get_range(const std::string&, cytolib::ColType, cytolib::RangeType) const’:
/home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library/cytolib/include/cytolib/CytoFrameView.hpp:260:9: note: parameter passing for argument of type ‘std::pair<double, double>’ when C++17 is enabled changed to match C++14 in GCC 10.1
  260 |         {
      |         ^
/opt/ohpc/pub/compiler/gcc/14.2.0/bin/aarch64-unknown-linux-gnu-g++ -std=gnu++17 -I"/home/biocbuild/R/R/include" -DNDEBUG -DROUT -I../inst/include -DBOOST_NO_AUTO_PTR -Wno-pedantic  -w -Wfatal-errors -I'/home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library/cpp11/include' -I'/home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library/BH/include' -I'/home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library/RProtoBufLib/include' -I'/home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library/cytolib/include' -I'/home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library/Rhdf5lib/include' -I/usr/local/include    -fPIC  -g -O2  -Wall -Werror=format-security -DR_NO_REMAP -c getDescendants.cpp -o getDescendants.o
In file included from /home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library/cytolib/include/cytolib/GatingHierarchy.hpp:21,
                 from /home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library/cytolib/include/cytolib/GatingSet.hpp:14,
                 from getDescendants.cpp:1:
/home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library/cytolib/include/cytolib/CytoFrameView.hpp: In member function ‘std::pair<double, double> cytolib::CytoFrameView::get_range(const std::string&, cytolib::ColType, cytolib::RangeType) const’:
/home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library/cytolib/include/cytolib/CytoFrameView.hpp:260:9: note: parameter passing for argument of type ‘std::pair<double, double>’ when C++17 is enabled changed to match C++14 in GCC 10.1
  260 |         {
      |         ^
/opt/ohpc/pub/compiler/gcc/14.2.0/bin/aarch64-unknown-linux-gnu-g++ -std=gnu++17 -I"/home/biocbuild/R/R/include" -DNDEBUG -DROUT -I../inst/include -DBOOST_NO_AUTO_PTR -Wno-pedantic  -w -Wfatal-errors -I'/home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library/cpp11/include' -I'/home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library/BH/include' -I'/home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library/RProtoBufLib/include' -I'/home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library/cytolib/include' -I'/home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library/Rhdf5lib/include' -I/usr/local/include    -fPIC  -g -O2  -Wall -Werror=format-security -DR_NO_REMAP -c getPopStats.cpp -o getPopStats.o
In file included from /home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library/cytolib/include/cytolib/GatingHierarchy.hpp:21,
                 from /home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library/cytolib/include/cytolib/GatingSet.hpp:14,
                 from getPopStats.cpp:1:
/home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library/cytolib/include/cytolib/CytoFrameView.hpp: In member function ‘std::pair<double, double> cytolib::CytoFrameView::get_range(const std::string&, cytolib::ColType, cytolib::RangeType) const’:
/home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library/cytolib/include/cytolib/CytoFrameView.hpp:260:9: note: parameter passing for argument of type ‘std::pair<double, double>’ when C++17 is enabled changed to match C++14 in GCC 10.1
  260 |         {
      |         ^
/opt/ohpc/pub/compiler/gcc/14.2.0/bin/aarch64-unknown-linux-gnu-g++ -std=gnu++17 -I"/home/biocbuild/R/R/include" -DNDEBUG -DROUT -I../inst/include -DBOOST_NO_AUTO_PTR -Wno-pedantic  -w -Wfatal-errors -I'/home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library/cpp11/include' -I'/home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library/BH/include' -I'/home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library/RProtoBufLib/include' -I'/home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library/cytolib/include' -I'/home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library/Rhdf5lib/include' -I/usr/local/include    -fPIC  -g -O2  -Wall -Werror=format-security -DR_NO_REMAP -c getSingleCellExpression.cpp -o getSingleCellExpression.o
In file included from /home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library/cytolib/include/cytolib/GatingHierarchy.hpp:21,
                 from /home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library/cytolib/include/cytolib/GatingSet.hpp:14,
                 from getSingleCellExpression.cpp:1:
/home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library/cytolib/include/cytolib/CytoFrameView.hpp: In member function ‘std::pair<double, double> cytolib::CytoFrameView::get_range(const std::string&, cytolib::ColType, cytolib::RangeType) const’:
/home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library/cytolib/include/cytolib/CytoFrameView.hpp:260:9: note: parameter passing for argument of type ‘std::pair<double, double>’ when C++17 is enabled changed to match C++14 in GCC 10.1
  260 |         {
      |         ^
/opt/ohpc/pub/compiler/gcc/14.2.0/bin/aarch64-unknown-linux-gnu-g++ -std=gnu++17 -I"/home/biocbuild/R/R/include" -DNDEBUG -DROUT -I../inst/include -DBOOST_NO_AUTO_PTR -Wno-pedantic  -w -Wfatal-errors -I'/home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library/cpp11/include' -I'/home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library/BH/include' -I'/home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library/RProtoBufLib/include' -I'/home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library/cytolib/include' -I'/home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library/Rhdf5lib/include' -I/usr/local/include    -fPIC  -g -O2  -Wall -Werror=format-security -DR_NO_REMAP -c h5_error_r_handler.cpp -o h5_error_r_handler.o
In file included from /home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library/cytolib/include/cytolib/GatingHierarchy.hpp:21,
                 from /home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library/cytolib/include/cytolib/GatingSet.hpp:14,
                 from ../inst/include/flowWorkspace/pairVectorCpp11Convert.h:12,
                 from h5_error_r_handler.cpp:8:
/home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library/cytolib/include/cytolib/CytoFrameView.hpp: In member function ‘std::pair<double, double> cytolib::CytoFrameView::get_range(const std::string&, cytolib::ColType, cytolib::RangeType) const’:
/home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library/cytolib/include/cytolib/CytoFrameView.hpp:260:9: note: parameter passing for argument of type ‘std::pair<double, double>’ when C++17 is enabled changed to match C++14 in GCC 10.1
  260 |         {
      |         ^
/opt/ohpc/pub/compiler/gcc/14.2.0/bin/aarch64-unknown-linux-gnu-g++ -std=gnu++17 -I"/home/biocbuild/R/R/include" -DNDEBUG -DROUT -I../inst/include -DBOOST_NO_AUTO_PTR -Wno-pedantic  -w -Wfatal-errors -I'/home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library/cpp11/include' -I'/home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library/BH/include' -I'/home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library/RProtoBufLib/include' -I'/home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library/cytolib/include' -I'/home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library/Rhdf5lib/include' -I/usr/local/include    -fPIC  -g -O2  -Wall -Werror=format-security -DR_NO_REMAP -c setCounts.cpp -o setCounts.o
In file included from /home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library/cytolib/include/cytolib/GatingHierarchy.hpp:21,
                 from /home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library/cytolib/include/cytolib/GatingSet.hpp:14,
                 from setCounts.cpp:1:
/home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library/cytolib/include/cytolib/CytoFrameView.hpp: In member function ‘std::pair<double, double> cytolib::CytoFrameView::get_range(const std::string&, cytolib::ColType, cytolib::RangeType) const’:
/home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library/cytolib/include/cytolib/CytoFrameView.hpp:260:9: note: parameter passing for argument of type ‘std::pair<double, double>’ when C++17 is enabled changed to match C++14 in GCC 10.1
  260 |         {
      |         ^
/opt/ohpc/pub/compiler/gcc/14.2.0/bin/aarch64-unknown-linux-gnu-g++ -std=gnu++17 -shared -L/home/biocbuild/R/R/lib -L/usr/local/lib -o flowWorkspace.so R_API.o R_GatingHierarchy.o R_GatingSet.o cpp11.o cytoframeAPI.o cytosetAPI.o getDescendants.o getPopStats.o getSingleCellExpression.o h5_error_r_handler.o setCounts.o /home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library/cytolib/lib/libcytolib.a /home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library/Rhdf5lib/lib/libhdf5_cpp.a /home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library/Rhdf5lib/lib/libhdf5.a -L/home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library/Rhdf5lib/lib -lcrypto -lcurl -lsz -laec -lz -ldl -lm -lopenblas -L/home/biocbuild/R/R/lib -lR
installing to /home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library/00LOCK-flowWorkspace/00new/flowWorkspace/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (flowWorkspace)