Catherine Ross
| Snapshot Date: 2025-09-26 13:45 -0400 (Fri, 26 Sep 2025) |
| git_url: https://git.bioconductor.org/packages/fedup |
| git_branch: devel |
| git_last_commit: 4e5f2ea |
| git_last_commit_date: 2025-04-15 12:24:08 -0400 (Tue, 15 Apr 2025) |
| Back to Multiple platform build/check report for BioC 3.22: simplified long |
|
This page was generated on 2025-09-27 12:06 -0400 (Sat, 27 Sep 2025).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 24.04.3 LTS) | x86_64 | 4.5.1 Patched (2025-08-23 r88802) -- "Great Square Root" | 4832 |
| lconway | macOS 12.7.1 Monterey | x86_64 | 4.5.1 Patched (2025-09-10 r88807) -- "Great Square Root" | 4620 |
| kjohnson3 | macOS 13.7.7 Ventura | arm64 | 4.5.1 Patched (2025-09-10 r88807) -- "Great Square Root" | 4565 |
| taishan | Linux (openEuler 24.03 LTS) | aarch64 | 4.5.0 (2025-04-11) -- "How About a Twenty-Six" | 4563 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 720/2334 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| fedup 1.17.0 (landing page) Catherine Ross
| nebbiolo2 | Linux (Ubuntu 24.04.3 LTS) / x86_64 | OK | OK | OK | | ||||||||
| lconway | macOS 12.7.1 Monterey / x86_64 | OK | OK | OK | OK | | ||||||||
| kjohnson3 | macOS 13.7.7 Ventura / arm64 | OK | ERROR | skipped | skipped | |||||||||
| taishan | Linux (openEuler 24.03 LTS) / aarch64 | OK | OK | OK | ||||||||||
|
To the developers/maintainers of the fedup package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/fedup.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: fedup |
| Version: 1.17.0 |
| Command: /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data fedup |
| StartedAt: 2025-09-26 16:21:03 -0400 (Fri, 26 Sep 2025) |
| EndedAt: 2025-09-26 16:21:08 -0400 (Fri, 26 Sep 2025) |
| EllapsedTime: 5.1 seconds |
| RetCode: 1 |
| Status: ERROR |
| PackageFile: None |
| PackageFileSize: NA |
##############################################################################
##############################################################################
###
### Running command:
###
### /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data fedup
###
##############################################################################
##############################################################################
* checking for file ‘fedup/DESCRIPTION’ ... OK
* preparing ‘fedup’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘fedup_doubleTest.rmd’ using rmarkdown
Quitting from fedup_doubleTest.rmd:51-53 [unnamed-chunk-3]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error:
! Failed to install 'fedup' from GitHub:
HTTP error 403.
API rate limit exceeded for 170.223.207.78. (But here's the good news: Authenticated requests get a higher rate limit. Check out the documentation for more details.)
Rate limit remaining: 0/60
Rate limit reset at: 2025-09-26 20:28:14 UTC
To increase your GitHub API rate limit
- Use `usethis::create_github_token()` to create a Personal Access Token.
- Use `gitcreds::gitcreds_set()` to add the token.
---
Backtrace:
▆
1. └─devtools::install_github("rosscm/fedup", quiet = TRUE)
2. ├─pkgbuild::with_build_tools(...)
3. └─remotes:::install_remotes(...)
4. └─base::tryCatch(...)
5. └─base (local) tryCatchList(expr, classes, parentenv, handlers)
6. └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])
7. └─value[[3L]](cond)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'fedup_doubleTest.rmd' failed with diagnostics:
Failed to install 'fedup' from GitHub:
HTTP error 403.
API rate limit exceeded for 170.223.207.78. (But here's the good news: Authenticated requests get a higher rate limit. Check out the documentation for more details.)
Rate limit remaining: 0/60
Rate limit reset at: 2025-09-26 20:28:14 UTC
To increase your GitHub API rate limit
- Use `usethis::create_github_token()` to create a Personal Access Token.
- Use `gitcreds::gitcreds_set()` to add the token.
--- failed re-building ‘fedup_doubleTest.rmd’
--- re-building ‘fedup_mutliTest.rmd’ using rmarkdown
Quitting from fedup_mutliTest.rmd:51-53 [unnamed-chunk-3]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error:
! Failed to install 'fedup' from GitHub:
HTTP error 403.
API rate limit exceeded for 170.223.207.78. (But here's the good news: Authenticated requests get a higher rate limit. Check out the documentation for more details.)
Rate limit remaining: 0/60
Rate limit reset at: 2025-09-26 20:28:14 UTC
To increase your GitHub API rate limit
- Use `usethis::create_github_token()` to create a Personal Access Token.
- Use `gitcreds::gitcreds_set()` to add the token.
---
Backtrace:
▆
1. └─devtools::install_github("rosscm/fedup", quiet = TRUE)
2. ├─pkgbuild::with_build_tools(...)
3. └─remotes:::install_remotes(...)
4. └─base::tryCatch(...)
5. └─base (local) tryCatchList(expr, classes, parentenv, handlers)
6. └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])
7. └─value[[3L]](cond)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'fedup_mutliTest.rmd' failed with diagnostics:
Failed to install 'fedup' from GitHub:
HTTP error 403.
API rate limit exceeded for 170.223.207.78. (But here's the good news: Authenticated requests get a higher rate limit. Check out the documentation for more details.)
Rate limit remaining: 0/60
Rate limit reset at: 2025-09-26 20:28:14 UTC
To increase your GitHub API rate limit
- Use `usethis::create_github_token()` to create a Personal Access Token.
- Use `gitcreds::gitcreds_set()` to add the token.
--- failed re-building ‘fedup_mutliTest.rmd’
--- re-building ‘fedup_singleTest.rmd’ using rmarkdown
Quitting from fedup_singleTest.rmd:51-53 [unnamed-chunk-3]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error:
! Failed to install 'fedup' from GitHub:
HTTP error 403.
API rate limit exceeded for 170.223.207.78. (But here's the good news: Authenticated requests get a higher rate limit. Check out the documentation for more details.)
Rate limit remaining: 0/60
Rate limit reset at: 2025-09-26 20:28:14 UTC
To increase your GitHub API rate limit
- Use `usethis::create_github_token()` to create a Personal Access Token.
- Use `gitcreds::gitcreds_set()` to add the token.
---
Backtrace:
▆
1. └─devtools::install_github("rosscm/fedup", quiet = TRUE)
2. ├─pkgbuild::with_build_tools(...)
3. └─remotes:::install_remotes(...)
4. └─base::tryCatch(...)
5. └─base (local) tryCatchList(expr, classes, parentenv, handlers)
6. └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])
7. └─value[[3L]](cond)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'fedup_singleTest.rmd' failed with diagnostics:
Failed to install 'fedup' from GitHub:
HTTP error 403.
API rate limit exceeded for 170.223.207.78. (But here's the good news: Authenticated requests get a higher rate limit. Check out the documentation for more details.)
Rate limit remaining: 0/60
Rate limit reset at: 2025-09-26 20:28:14 UTC
To increase your GitHub API rate limit
- Use `usethis::create_github_token()` to create a Personal Access Token.
- Use `gitcreds::gitcreds_set()` to add the token.
--- failed re-building ‘fedup_singleTest.rmd’
SUMMARY: processing the following files failed:
‘fedup_doubleTest.rmd’ ‘fedup_mutliTest.rmd’ ‘fedup_singleTest.rmd’
Error: Vignette re-building failed.
Execution halted