Pierre Khoueiry
| Snapshot Date: 2024-11-25 13:40 -0500 (Mon, 25 Nov 2024) |
| git_url: https://git.bioconductor.org/packages/fcScan |
| git_branch: devel |
| git_last_commit: 59bb726 |
| git_last_commit_date: 2024-10-29 10:39:14 -0500 (Tue, 29 Oct 2024) |
| Back to Multiple platform build/check report for BioC 3.21: simplified long |
|
This page was generated on 2024-11-26 11:44 -0500 (Tue, 26 Nov 2024).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 24.04.1 LTS) | x86_64 | R Under development (unstable) (2024-10-21 r87258) -- "Unsuffered Consequences" | 4748 |
| palomino7 | Windows Server 2022 Datacenter | x64 | R Under development (unstable) (2024-10-26 r87273 ucrt) -- "Unsuffered Consequences" | 4459 |
| lconway | macOS 12.7.1 Monterey | x86_64 | R Under development (unstable) (2024-11-20 r87352) -- "Unsuffered Consequences" | 4350 |
| kjohnson3 | macOS 13.6.5 Ventura | arm64 | R Under development (unstable) (2024-11-20 r87352) -- "Unsuffered Consequences" | 4108 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 696/2272 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| fcScan 1.21.0 (landing page) Pierre Khoueiry
| nebbiolo1 | Linux (Ubuntu 24.04.1 LTS) / x86_64 | OK | OK | OK | | ||||||||
| palomino7 | Windows Server 2022 Datacenter / x64 | OK | ERROR | skipped | skipped | |||||||||
| lconway | macOS 12.7.1 Monterey / x86_64 | OK | OK | OK | OK | | ||||||||
| kjohnson3 | macOS 13.6.5 Ventura / arm64 | OK | OK | OK | OK | | ||||||||
|
To the developers/maintainers of the fcScan package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/fcScan.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: fcScan |
| Version: 1.21.0 |
| Command: /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:fcScan.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings fcScan_1.21.0.tar.gz |
| StartedAt: 2024-11-25 22:10:17 -0500 (Mon, 25 Nov 2024) |
| EndedAt: 2024-11-25 22:15:27 -0500 (Mon, 25 Nov 2024) |
| EllapsedTime: 310.0 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: fcScan.Rcheck |
| Warnings: 0 |
##############################################################################
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###
### Running command:
###
### /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:fcScan.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings fcScan_1.21.0.tar.gz
###
##############################################################################
##############################################################################
* using log directory ‘/Users/biocbuild/bbs-3.21-bioc/meat/fcScan.Rcheck’
* using R Under development (unstable) (2024-11-20 r87352)
* using platform: aarch64-apple-darwin20
* R was compiled by
Apple clang version 14.0.0 (clang-1400.0.29.202)
GNU Fortran (GCC) 12.2.0
* running under: macOS Ventura 13.7.1
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘fcScan/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘fcScan’ version ‘1.21.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ...Warning: unable to access index for repository https://CRAN.R-project.org/src/contrib:
cannot open URL 'https://CRAN.R-project.org/src/contrib/PACKAGES'
OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘fcScan’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
Running ‘runTests.R’
OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: OK
fcScan.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL fcScan ### ############################################################################## ############################################################################## * installing to library ‘/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library’ * installing *source* package ‘fcScan’ ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (fcScan)
fcScan.Rcheck/tests/runTests.Rout
R Under development (unstable) (2024-11-20 r87352) -- "Unsuffered Consequences"
Copyright (C) 2024 The R Foundation for Statistical Computing
Platform: aarch64-apple-darwin20
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> BiocGenerics:::testPackage("fcScan")
Loading required package: GenomicRanges
Loading required package: stats4
Loading required package: BiocGenerics
Loading required package: generics
Attaching package: 'generics'
The following objects are masked from 'package:base':
as.difftime, as.factor, as.ordered, intersect, is.element, setdiff,
setequal, union
Attaching package: 'BiocGenerics'
The following objects are masked from 'package:stats':
IQR, mad, sd, var, xtabs
The following objects are masked from 'package:base':
Filter, Find, Map, Position, Reduce, anyDuplicated, aperm, append,
as.data.frame, basename, cbind, colnames, dirname, do.call,
duplicated, eval, evalq, get, grep, grepl, is.unsorted, lapply,
mapply, match, mget, order, paste, pmax, pmax.int, pmin, pmin.int,
rank, rbind, rownames, sapply, saveRDS, table, tapply, unique,
unsplit, which.max, which.min
Loading required package: S4Vectors
Attaching package: 'S4Vectors'
The following object is masked from 'package:utils':
findMatches
The following objects are masked from 'package:base':
I, expand.grid, unname
Loading required package: IRanges
Loading required package: GenomeInfoDb
17 entries loaded
Running getCluster using 1 threads
Time difference of 0.05941701 secs
Sites in condition do not match sites in data
3 entries loaded
Running getCluster using 1 threads
Time difference of 0.01957417 secs
17 entries loaded
Running getCluster using 1 threads
Time difference of 0.01887488 secs
17 entries loaded
Running getCluster using 1 threads
Time difference of 0.01945305 secs
17 entries loaded
Running getCluster using 1 threads
No cluster found
17 entries loaded
Running getCluster using 1 threads
Time difference of 0.02177882 secs
17 entries loaded
Running getCluster using 1 threads
Time difference of 0.0194521 secs
17 entries loaded
Running getCluster using 1 threads
Time difference of 0.0213809 secs
17 entries loaded
Running getCluster using 1 threads
Time difference of 0.01840305 secs
17 entries loaded
Running getCluster using 1 threads
Time difference of 0.01875114 secs
17 entries loaded
Running getCluster using 1 threads
Time difference of 0.01768279 secs
6 entries loaded
Running getCluster using 1 threads
Time difference of 0.02256799 secs
6 entries loaded
Running getCluster using 1 threads
Time difference of 0.0167172 secs
6 entries loaded
Running getCluster using 1 threads
Time difference of 0.01472998 secs
6 entries loaded
Running getCluster using 1 threads
Time difference of 0.01489305 secs
10 entries loaded
Running getCluster using 1 threads
Time difference of 0.01697707 secs
10 entries loaded
Running getCluster using 1 threads
No cluster found
10 entries loaded
Running getCluster using 1 threads
Time difference of 0.01693296 secs
16 entries loaded
Running getCluster using 1 threads
Time difference of 0.01546407 secs
6 entries loaded
Running getCluster using 1 threads
Time difference of 0.01669216 secs
6 entries loaded
Running getCluster using 1 threads
Time difference of 0.016469 secs
6 entries loaded
Running getCluster using 1 threads
Time difference of 0.01717186 secs
6 entries loaded
Running getCluster using 1 threads
Time difference of 0.01736498 secs
6 entries loaded
Running getCluster using 1 threads
Time difference of 0.01699305 secs
17 entries loaded
Running getCluster using 1 threads
Time difference of 0.01617408 secs
17 entries loaded
Running getCluster using 1 threads
Time difference of 0.01694489 secs
17 entries loaded
Running getCluster using 1 threads
Time difference of 0.01695013 secs
17 entries loaded
Running getCluster using 1 threads
Time difference of 0.01837921 secs
17 entries loaded
Running getCluster using 1 threads
Time difference of 0.01714587 secs
17 entries loaded
Running getCluster using 1 threads
Time difference of 0.0162642 secs
17 entries loaded
Running getCluster using 1 threads
Time difference of 0.01625896 secs
17 entries loaded
Running getCluster using 1 threads
Time difference of 0.02254605 secs
17 entries loaded
Running getCluster using 1 threads
Time difference of 0.02416396 secs
17 entries loaded
Running getCluster using 1 threads
Time difference of 0.02258611 secs
17 entries loaded
Running getCluster using 1 threads
Time difference of 0.024616 secs
17 entries loaded
Running getCluster using 1 threads
Time difference of 0.01815915 secs
17 entries loaded
Running getCluster using 1 threads
Time difference of 0.02273202 secs
17 entries loaded
Running getCluster using 1 threads
Time difference of 0.02151394 secs
17 entries loaded
Running getCluster using 1 threads
Time difference of 0.01824379 secs
17 entries loaded
Running getCluster using 1 threads
Time difference of 0.01830816 secs
17 entries loaded
Running getCluster using 1 threads
Time difference of 0.016716 secs
17 entries loaded
Running getCluster using 1 threads
Time difference of 0.02136183 secs
17 entries loaded
Running getCluster using 1 threads
Time difference of 0.01742101 secs
17 entries loaded
Running getCluster using 1 threads
Time difference of 0.02280188 secs
RUNIT TEST PROTOCOL -- Mon Nov 25 22:15:23 2024
***********************************************
Number of test functions: 1
Number of errors: 0
Number of failures: 0
1 Test Suite :
fcScan RUnit Tests - 1 test function, 0 errors, 0 failures
Number of test functions: 1
Number of errors: 0
Number of failures: 0
>
> proc.time()
user system elapsed
4.979 0.230 5.229
fcScan.Rcheck/fcScan-Ex.timings
| name | user | system | elapsed | |
| getCluster | 0.074 | 0.005 | 0.079 | |