Multiple platform build/check report for BioC 3.21 - INSTALL results for fastseg on kjohnson3

Hostname	OS	Arch (*)	R version	Installed pkgs
nebbiolo1	Linux (Ubuntu 24.04.1 LTS)	x86_64	R Under development (unstable) (2024-10-21 r87258) -- "Unsuffered Consequences"	4754
palomino7	Windows Server 2022 Datacenter	x64	R Under development (unstable) (2024-10-26 r87273 ucrt) -- "Unsuffered Consequences"	4472
lconway	macOS 12.7.1 Monterey	x86_64	R Under development (unstable) (2024-11-20 r87352) -- "Unsuffered Consequences"	4426
kjohnson3	macOS 13.7.1 Ventura	arm64	R Under development (unstable) (2024-11-20 r87352) -- "Unsuffered Consequences"	4381
kunpeng2	Linux (openEuler 22.03 LTS-SP1)	aarch64	R Under development (unstable) (2024-11-24 r87369) -- "Unsuffered Consequences"	4373
Click on any hostname to see more info about the system (e.g. compilers) () as reported by 'uname -p', except on Windows and Mac OS X*

INSTALL results for fastseg on kjohnson3

To the developers/maintainers of the fastseg package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/fastseg.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results

Summary

Package: fastseg

Version: 1.53.2

Command: /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL fastseg

StartedAt: 2024-12-23 15:06:53 -0500 (Mon, 23 Dec 2024)

EndedAt: 2024-12-23 15:06:58 -0500 (Mon, 23 Dec 2024)

EllapsedTime: 4.9 seconds

RetCode: 0

Status: OK

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL fastseg
###
##############################################################################
##############################################################################


* installing to library ‘/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library’
* installing *source* package ‘fastseg’ ...
** using staged installation
** libs
using C compiler: ‘Apple clang version 15.0.0 (clang-1500.1.0.2.5)’
using C++ compiler: ‘Apple clang version 15.0.0 (clang-1500.1.0.2.5)’
using SDK: ‘MacOSX11.3.sdk’
clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -c R_init_fastseg.c -o R_init_fastseg.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -DR_NO_REMAP -c segment.cpp -o segment.o
segment.cpp:60:20: warning: variable 'globalSd' set but not used [-Wunused-but-set-variable]
        double globalMean,globalSd,diff,M2,globalVariance;
                          ^
segment.cpp:61:9: warning: variable 'oldStatistic' set but not used [-Wunused-but-set-variable]
        double oldStatistic, meanLeft,meanRight,varLeft,varRight;
               ^
segment.cpp:62:31: warning: variable 'maxStatistic' set but not used [-Wunused-but-set-variable]
        double newStatistic,meanDiff,maxStatistic,DOF,a,b,eps1;
                                     ^
segment.cpp:63:40: warning: variable 'maxIdx' set but not used [-Wunused-but-set-variable]
        double newPValue, maxPValue,oldPValue,maxIdx;
                                              ^
segment.cpp:65:9: warning: unused variable 'Rf_beta' [-Wunused-variable]
        double beta,nn;
               ^
/Library/Frameworks/R.framework/Resources/include/Rmath.h:212:15: note: expanded from macro 'beta'
#define beta            Rf_beta
                        ^
5 warnings generated.
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -DR_NO_REMAP -c segmentCyberT.cpp -o segmentCyberT.o
segmentCyberT.cpp:59:20: warning: variable 'globalSd' set but not used [-Wunused-but-set-variable]
        double globalMean,globalSd,diff,M2,globalVariance;
                          ^
segmentCyberT.cpp:60:9: warning: variable 'oldStatistic' set but not used [-Wunused-but-set-variable]
        double oldStatistic,meanLeft,meanRight,varLeft,varRight;
               ^
segmentCyberT.cpp:61:31: warning: variable 'maxStatistic' set but not used [-Wunused-but-set-variable]
        double newStatistic,meanDiff,maxStatistic,DOF,a,b,eps1;
                                     ^
segmentCyberT.cpp:63:50: warning: unused variable 'Rf_beta' [-Wunused-variable]
        double newStatisticBptLeft,newStatisticBptRight,beta,nn;
                                                        ^
/Library/Frameworks/R.framework/Resources/include/Rmath.h:212:15: note: expanded from macro 'beta'
#define beta            Rf_beta
                        ^
4 warnings generated.
clang++ -arch arm64 -std=gnu++17 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -L/Library/Frameworks/R.framework/Resources/lib -L/opt/R/arm64/lib -o fastseg.so R_init_fastseg.o segment.o segmentCyberT.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library/00LOCK-fastseg/00new/fastseg/libs
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (fastseg)