| Back to Build/check report for BioC 3.23: simplified long |
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This page was generated on 2026-01-27 11:32 -0500 (Tue, 27 Jan 2026).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 24.04.3 LTS) | x86_64 | R Under development (unstable) (2026-01-15 r89304) -- "Unsuffered Consequences" | 4813 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 718/2345 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| famat 1.21.3 (landing page) Mathieu Charles
| nebbiolo1 | Linux (Ubuntu 24.04.3 LTS) / x86_64 | ERROR | ERROR | skipped | |||||||||
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To the developers/maintainers of the famat package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/famat.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: famat |
| Version: 1.21.3 |
| Command: /home/biocbuild/bbs-3.23-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data famat |
| StartedAt: 2026-01-26 17:35:08 -0500 (Mon, 26 Jan 2026) |
| EndedAt: 2026-01-26 17:35:09 -0500 (Mon, 26 Jan 2026) |
| EllapsedTime: 1.0 seconds |
| RetCode: 1 |
| Status: ERROR |
| PackageFile: None |
| PackageFileSize: NA |
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### Running command:
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### /home/biocbuild/bbs-3.23-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data famat
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* checking for file ‘famat/DESCRIPTION’ ... OK
* preparing ‘famat’:
* checking DESCRIPTION meta-information ... OK
* installing the package (it is needed to build vignettes)
-----------------------------------
* installing *source* package ‘famat’ ...
** this is package ‘famat’ version ‘1.21.3’
** using staged installation
** R
Error in parse(...) :
/tmp/RtmpRvmhqg/Rbuild1a4edf6cc9ac46/famat/R/interactions.R:144:1: unexpected '>'
143: # all_compounds_chebi <- read.csv("data/all_compounds_chebi.csv")
144: >
^
ERROR: unable to collate and parse R files for package ‘famat’
* removing ‘/tmp/RtmpRvmhqg/Rinst1a4edf2fc2b96e/famat’
-----------------------------------
ERROR: package installation failed