| Back to Build/check report for BioC 3.23: simplified long |
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This page was generated on 2026-03-28 17:56 -0400 (Sat, 28 Mar 2026).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 24.04.3 LTS) | x86_64 | R Under development (unstable) (2026-03-05 r89546) -- "Unsuffered Consequences" | 4881 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 688/2372 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| epimutacions 1.15.0 (landing page) Dolors Pelegri-Siso
| nebbiolo1 | Linux (Ubuntu 24.04.3 LTS) / x86_64 | OK | ERROR | skipped | |||||||||
| See other builds for epimutacions in R Universe. | ||||||||||||||
|
To the developers/maintainers of the epimutacions package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/epimutacions.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: epimutacions |
| Version: 1.15.0 |
| Command: /home/biocbuild/bbs-3.23-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data epimutacions |
| StartedAt: 2026-03-27 17:32:19 -0400 (Fri, 27 Mar 2026) |
| EndedAt: 2026-03-27 17:35:22 -0400 (Fri, 27 Mar 2026) |
| EllapsedTime: 183.2 seconds |
| RetCode: 1 |
| Status: ERROR |
| PackageFile: None |
| PackageFileSize: NA |
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### Running command:
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### /home/biocbuild/bbs-3.23-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data epimutacions
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* checking for file ‘epimutacions/DESCRIPTION’ ... OK
* preparing ‘epimutacions’:
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package (it is needed to build vignettes)
* creating vignettes ... ERROR
--- re-building ‘epimutacions.Rmd’ using rmarkdown
Quitting from epimutacions.Rmd:609-611 [annot]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/httr2_http_504>
Error in `req_perform()`:
! HTTP 504 Gateway Timeout.
---
Backtrace:
▆
1. └─epimutacions::annotate_epimutations(epi_mvo, omim = TRUE)
2. └─epimutacions:::add_ensemble_regulatory(epi_results, build = build)
3. └─biomaRt::useDataset(...)
4. └─biomaRt:::.getAttributes(mart, verbose = verbose)
5. └─biomaRt:::.getAttrFilt(mart = mart, verbose = verbose, type = "attributes")
6. └─biomaRt:::bmRequest(...)
7. └─httr2::req_perform(request)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'epimutacions.Rmd' failed with diagnostics:
HTTP 504 Gateway Timeout.
--- failed re-building ‘epimutacions.Rmd’
SUMMARY: processing the following file failed:
‘epimutacions.Rmd’
Error: Vignette re-building failed.
Execution halted