Back to Multiple platform build/check report for BioC 3.21: simplified long |
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This page was generated on 2025-01-11 11:40 -0500 (Sat, 11 Jan 2025).
Hostname | OS | Arch (*) | R version | Installed pkgs |
---|---|---|---|---|
nebbiolo1 | Linux (Ubuntu 24.04.1 LTS) | x86_64 | R Under development (unstable) (2024-10-21 r87258) -- "Unsuffered Consequences" | 4760 |
palomino7 | Windows Server 2022 Datacenter | x64 | R Under development (unstable) (2024-10-26 r87273 ucrt) -- "Unsuffered Consequences" | 4479 |
lconway | macOS 12.7.1 Monterey | x86_64 | R Under development (unstable) (2024-11-20 r87352) -- "Unsuffered Consequences" | 4443 |
kjohnson3 | macOS 13.7.1 Ventura | arm64 | R Under development (unstable) (2024-11-20 r87352) -- "Unsuffered Consequences" | 4398 |
kunpeng2 | Linux (openEuler 22.03 LTS-SP1) | aarch64 | R Under development (unstable) (2024-11-24 r87369) -- "Unsuffered Consequences" | 4391 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
Package 604/2277 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
drugTargetInteractions 1.15.0 (landing page) Thomas Girke
| nebbiolo1 | Linux (Ubuntu 24.04.1 LTS) / x86_64 | OK | OK | OK | |||||||||
palomino7 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | |||||||||
lconway | macOS 12.7.1 Monterey / x86_64 | OK | OK | OK | OK | |||||||||
kjohnson3 | macOS 13.7.1 Ventura / arm64 | OK | OK | OK | OK | |||||||||
kunpeng2 | Linux (openEuler 22.03 LTS-SP1) / aarch64 | OK | OK | WARNINGS | ||||||||||
To the developers/maintainers of the drugTargetInteractions package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/drugTargetInteractions.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
Package: drugTargetInteractions |
Version: 1.15.0 |
Command: /home/biocbuild/bbs-3.21-bioc/R/bin/R CMD check --install=check:drugTargetInteractions.install-out.txt --library=/home/biocbuild/bbs-3.21-bioc/R/site-library --timings drugTargetInteractions_1.15.0.tar.gz |
StartedAt: 2025-01-10 21:43:21 -0500 (Fri, 10 Jan 2025) |
EndedAt: 2025-01-10 21:49:43 -0500 (Fri, 10 Jan 2025) |
EllapsedTime: 381.6 seconds |
RetCode: 0 |
Status: OK |
CheckDir: drugTargetInteractions.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.21-bioc/R/bin/R CMD check --install=check:drugTargetInteractions.install-out.txt --library=/home/biocbuild/bbs-3.21-bioc/R/site-library --timings drugTargetInteractions_1.15.0.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/home/biocbuild/bbs-3.21-bioc/meat/drugTargetInteractions.Rcheck’ * using R Under development (unstable) (2024-10-21 r87258) * using platform: x86_64-pc-linux-gnu * R was compiled by gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0 GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0 * running under: Ubuntu 24.04.1 LTS * using session charset: UTF-8 * checking for file ‘drugTargetInteractions/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘drugTargetInteractions’ version ‘1.15.0’ * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘drugTargetInteractions’ can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking loading without being on the library search path ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... NOTE .getCacheFile: no visible binding for global variable 'create_time' getParalogs: no visible global function definition for 'setNames' Undefined global functions or variables: create_time setNames Consider adding importFrom("stats", "setNames") to your NAMESPACE file. * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... NOTE Found the following Rd file(s) with Rd \link{} targets missing package anchors: getUniprotIDs.Rd: UniProt.ws Please provide package anchors for all Rd \link{} targets not in the package itself and the base packages. * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK Examples with CPU (user + system) or elapsed time > 5s user system elapsed drugTargetAnnotTable 41.496 2.523 44.026 transformTTD 4.194 0.696 8.634 * checking for unstated dependencies in vignettes ... OK * checking package vignettes ... OK * checking re-building of vignette outputs ... OK * checking PDF version of manual ... OK * DONE Status: 2 NOTEs See ‘/home/biocbuild/bbs-3.21-bioc/meat/drugTargetInteractions.Rcheck/00check.log’ for details.
drugTargetInteractions.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.21-bioc/R/bin/R CMD INSTALL drugTargetInteractions ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.21-bioc/R/site-library’ * installing *source* package ‘drugTargetInteractions’ ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (drugTargetInteractions)
drugTargetInteractions.Rcheck/drugTargetInteractions-Ex.timings
name | user | system | elapsed | |
cmpIdMapping | 0.000 | 0.001 | 0.000 | |
downloadChemblDb | 0 | 0 | 0 | |
downloadUniChem | 0.803 | 0.033 | 1.464 | |
drugTargetAnnot | 0.015 | 0.001 | 0.018 | |
drugTargetAnnotTable | 41.496 | 2.523 | 44.026 | |
drugTargetBioactivity | 0.075 | 0.005 | 0.080 | |
genConfig | 0.000 | 0.000 | 0.001 | |
getDrugTarget | 0.014 | 0.004 | 0.019 | |
getParalogs | 0.001 | 0.000 | 0.001 | |
getSymEnsUp | 0.920 | 0.159 | 1.090 | |
getUniprotIDs | 0.001 | 0.000 | 0.000 | |
processDrugage | 0.134 | 0.012 | 2.945 | |
runDrugTarget_Annot_Bioassay | 0.308 | 0.007 | 0.316 | |
transformTTD | 4.194 | 0.696 | 8.634 | |