Multiple platform build/check report for BioC 3.22 - BUILD results for drawProteins on lconway

Hostname	OS	Arch (*)	R version	Installed pkgs
nebbiolo2	Linux (Ubuntu 24.04.3 LTS)	x86_64	4.5.1 Patched (2025-08-23 r88802) -- "Great Square Root"	4816
lconway	macOS 12.7.1 Monterey	x86_64	4.5.1 Patched (2025-09-10 r88807) -- "Great Square Root"	4605
kjohnson3	macOS 13.7.7 Ventura	arm64	4.5.1 Patched (2025-09-10 r88807) -- "Great Square Root"	4549
taishan	Linux (openEuler 24.03 LTS)	aarch64	4.5.0 (2025-04-11) -- "How About a Twenty-Six"	4560
Click on any hostname to see more info about the system (e.g. compilers) () as reported by 'uname -p', except on Windows and Mac OS X*

BUILD results for drawProteins on lconway

To the developers/maintainers of the drawProteins package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/drawProteins.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results

Summary

Package: drawProteins

Version: 1.29.0

Command: /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data drawProteins

StartedAt: 2025-09-22 16:44:53 -0400 (Mon, 22 Sep 2025)

EndedAt: 2025-09-22 16:50:17 -0400 (Mon, 22 Sep 2025)

EllapsedTime: 324.2 seconds

RetCode: 1

Status: ERROR

PackageFile: None

PackageFileSize: NA

Command output

##############################################################################
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###
### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data drawProteins
###
##############################################################################
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* checking for file ‘drawProteins/DESCRIPTION’ ... OK
* preparing ‘drawProteins’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘drawProteins_BiocStyle.Rmd’ using rmarkdown

Quitting from drawProteins_BiocStyle.Rmd:69-73 [download_rel_json]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `curl::curl_fetch_memory()`:
! Server returned nothing (no headers, no data) [www.ebi.ac.uk]:
Empty reply from server
---
Backtrace:
    ▆
 1. ├─drawProteins::get_features("Q04206")
 2. │ └─httr::GET(url, httr::accept_json())
 3. │   └─httr:::request_perform(req, hu$handle$handle)
 4. │     ├─httr:::request_fetch(req$output, req$url, handle)
 5. │     └─httr:::request_fetch.write_memory(req$output, req$url, handle)
 6. │       └─curl::curl_fetch_memory(url, handle = handle)
 7. └─curl:::raise_libcurl_error(...)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'drawProteins_BiocStyle.Rmd' failed with diagnostics:
Server returned nothing (no headers, no data) [www.ebi.ac.uk]:
Empty reply from server
--- failed re-building ‘drawProteins_BiocStyle.Rmd’

--- re-building ‘drawProteins_extract_transcripts_BiocStyle.Rmd’ using rmarkdown
2025-09-22 16:50:07.938 R[56796:348395821] XType: com.apple.fonts is not accessible.
2025-09-22 16:50:07.938 R[56796:348395821] XType: XTFontStaticRegistry is enabled.
--- finished re-building ‘drawProteins_extract_transcripts_BiocStyle.Rmd’

SUMMARY: processing the following file failed:
  ‘drawProteins_BiocStyle.Rmd’

Error: Vignette re-building failed.
Execution halted