Francesc Catala-Moll
| Snapshot Date: 2026-05-05 13:45 -0400 (Tue, 05 May 2026) |
| git_url: https://git.bioconductor.org/packages/dar |
| git_branch: devel |
| git_last_commit: 92a50d1 |
| git_last_commit_date: 2026-04-28 09:02:15 -0400 (Tue, 28 Apr 2026) |
| Back to Multiple platform build/check report for BioC 3.24: simplified long |
|
This page was generated on 2026-05-06 11:34 -0400 (Wed, 06 May 2026).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 24.04.4 LTS) | x86_64 | 4.6.0 RC (2026-04-17 r89917) -- "Because it was There" | 4878 |
| taishan | Linux (openEuler 24.03 LTS) | aarch64 | 4.5.0 (2025-04-11) -- "How About a Twenty-Six" | 4663 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 517/2366 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| dar 1.9.0 (landing page) Francesc Catala-Moll
| nebbiolo2 | Linux (Ubuntu 24.04.4 LTS) / x86_64 | OK | OK | OK | | ||||||||
| taishan | Linux (openEuler 24.03 LTS) / aarch64 | OK | ERROR | skipped | ||||||||||
| See other builds for dar in R Universe. | ||||||||||||||
|
To the developers/maintainers of the dar package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/dar.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. - See Martin Grigorov's blog post for how to debug Linux ARM64 related issues on a x86_64 host. |
| Package: dar |
| Version: 1.9.0 |
| Command: /home/biocbuild/R/R/bin/R CMD build --keep-empty-dirs --no-resave-data dar |
| StartedAt: 2026-05-05 02:37:24 -0000 (Tue, 05 May 2026) |
| EndedAt: 2026-05-05 02:41:30 -0000 (Tue, 05 May 2026) |
| EllapsedTime: 246.1 seconds |
| RetCode: 1 |
| Status: ERROR |
| PackageFile: None |
| PackageFileSize: NA |
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### Running command:
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### /home/biocbuild/R/R/bin/R CMD build --keep-empty-dirs --no-resave-data dar
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* checking for file ‘dar/DESCRIPTION’ ... OK
* preparing ‘dar’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘article.Rmd’ using rmarkdown
Quitting from article.Rmd:161-165 [unnamed-chunk-5]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
NULL
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'article.Rmd' failed with diagnostics:
ℹ In index: 1.
Caused by error in `purrr::map()`:
ℹ In index: 1.
ℹ With name: RiskGroup2.
Caused by error in `map()`:
ℹ In index: 1.
Caused by error:
! object ‘.read_header’ is not exported by 'namespace:nanonext'
--- failed re-building ‘article.Rmd’
--- re-building ‘bioinformatics_vignette.Rmd’ using rmarkdown
Quitting from bioinformatics_vignette.Rmd:104-109 [unnamed-chunk-6]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
NULL
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'bioinformatics_vignette.Rmd' failed with diagnostics:
ℹ In index: 1.
Caused by error in `purrr::map()`:
ℹ In index: 1.
ℹ With name: RiskGroup2.
Caused by error in `map()`:
ℹ In index: 1.
Caused by error:
! object ‘.read_header’ is not exported by 'namespace:nanonext'
--- failed re-building ‘bioinformatics_vignette.Rmd’
--- re-building ‘dar.Rmd’ using rmarkdown
Quitting from dar.Rmd:153-156 [prep]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
NULL
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'dar.Rmd' failed with diagnostics:
ℹ In index: 1.
Caused by error in `purrr::map()`:
ℹ In index: 1.
ℹ With name: RiskGroup2.
Caused by error in `map()`:
ℹ In index: 1.
Caused by error:
! object ‘.read_header’ is not exported by 'namespace:nanonext'
--- failed re-building ‘dar.Rmd’
--- re-building ‘data_import.Rmd’ using rmarkdown
Warning: The vignette title specified in \VignetteIndexEntry{} is different from the title in the YAML metadata. The former is "Data Import", and the latter is "Converting Common Data Formats to Phyloseq and TreeSummarizedExperiment". If that is intentional, you may set options(rmarkdown.html_vignette.check_title = FALSE) to suppress this check.
--- finished re-building ‘data_import.Rmd’
--- re-building ‘filtering_subsetting.Rmd’ using rmarkdown
--- finished re-building ‘filtering_subsetting.Rmd’
--- re-building ‘import_export_recipes.Rmd’ using rmarkdown
Quitting from import_export_recipes.Rmd:89-93 [unnamed-chunk-4]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
NULL
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'import_export_recipes.Rmd' failed with diagnostics:
ℹ In index: 1.
Caused by error in `purrr::map()`:
ℹ In index: 1.
ℹ With name: RiskGroup2.
Caused by error in `map()`:
ℹ In index: 1.
Caused by error:
! object '.read_header' is not exported by 'namespace:nanonext'
--- failed re-building ‘import_export_recipes.Rmd’
SUMMARY: processing the following files failed:
‘article.Rmd’ ‘bioinformatics_vignette.Rmd’ ‘dar.Rmd’
‘import_export_recipes.Rmd’
Error: Vignette re-building failed.
Execution halted