| Back to Multiple platform build/check report for BioC 3.23: simplified long |
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This page was generated on 2025-11-17 11:39 -0500 (Mon, 17 Nov 2025).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 24.04.3 LTS) | x86_64 | R Under development (unstable) (2025-10-20 r88955) -- "Unsuffered Consequences" | 4826 |
| lconway | macOS 12.7.6 Monterey | x86_64 | R Under development (unstable) (2025-10-21 r88958) -- "Unsuffered Consequences" | 4491 |
| kjohnson3 | macOS 13.7.7 Ventura | arm64 | R Under development (unstable) (2025-11-04 r88984) -- "Unsuffered Consequences" | 4562 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 431/2325 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| consensusDE 1.29.0 (landing page) Ashley J. Waardenberg
| nebbiolo1 | Linux (Ubuntu 24.04.3 LTS) / x86_64 | ERROR | ERROR | skipped | |||||||||
| lconway | macOS 12.7.6 Monterey / x86_64 | ERROR | ERROR | skipped | skipped | |||||||||
| kjohnson3 | macOS 13.7.7 Ventura / arm64 | ERROR | ERROR | skipped | skipped | |||||||||
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To the developers/maintainers of the consensusDE package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/consensusDE.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: consensusDE |
| Version: 1.29.0 |
| Command: /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data consensusDE |
| StartedAt: 2025-11-16 21:36:05 -0500 (Sun, 16 Nov 2025) |
| EndedAt: 2025-11-16 21:36:20 -0500 (Sun, 16 Nov 2025) |
| EllapsedTime: 15.1 seconds |
| RetCode: 1 |
| Status: ERROR |
| PackageFile: None |
| PackageFileSize: NA |
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### Running command:
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### /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data consensusDE
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* checking for file ‘consensusDE/DESCRIPTION’ ... OK
* preparing ‘consensusDE’:
* checking DESCRIPTION meta-information ... OK
* installing the package (it is needed to build vignettes)
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* installing *source* package ‘consensusDE’ ...
** this is package ‘consensusDE’ version ‘1.29.0’
** using staged installation
** R
** byte-compile and prepare package for lazy loading
Error: object ‘makeTxDbFromGFF’ is not exported by 'namespace:GenomicFeatures'
Execution halted
ERROR: lazy loading failed for package ‘consensusDE’
* removing ‘/private/var/folders/db/4tvgx8jx4z3fm1gzlnlzw9rc0000gq/T/Rtmpqq8TUr/Rinste2d07cae2e63/consensusDE’
-----------------------------------
ERROR: package installation failed