Back to Multiple platform build/check report for BioC 3.21: simplified long |
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This page was generated on 2024-12-24 11:46 -0500 (Tue, 24 Dec 2024).
Hostname | OS | Arch (*) | R version | Installed pkgs |
---|---|---|---|---|
nebbiolo1 | Linux (Ubuntu 24.04.1 LTS) | x86_64 | R Under development (unstable) (2024-10-21 r87258) -- "Unsuffered Consequences" | 4754 |
palomino7 | Windows Server 2022 Datacenter | x64 | R Under development (unstable) (2024-10-26 r87273 ucrt) -- "Unsuffered Consequences" | 4472 |
lconway | macOS 12.7.1 Monterey | x86_64 | R Under development (unstable) (2024-11-20 r87352) -- "Unsuffered Consequences" | 4426 |
kjohnson3 | macOS 13.7.1 Ventura | arm64 | R Under development (unstable) (2024-11-20 r87352) -- "Unsuffered Consequences" | 4381 |
kunpeng2 | Linux (openEuler 22.03 LTS-SP1) | aarch64 | R Under development (unstable) (2024-11-24 r87369) -- "Unsuffered Consequences" | 4373 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
Package 403/2274 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
cola 2.13.0 (landing page) Zuguang Gu
| nebbiolo1 | Linux (Ubuntu 24.04.1 LTS) / x86_64 | OK | OK | OK | |||||||||
palomino7 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | |||||||||
lconway | macOS 12.7.1 Monterey / x86_64 | OK | OK | OK | OK | |||||||||
kjohnson3 | macOS 13.7.1 Ventura / arm64 | OK | OK | OK | OK | |||||||||
kunpeng2 | Linux (openEuler 22.03 LTS-SP1) / aarch64 | OK | OK | WARNINGS | ||||||||||
To the developers/maintainers of the cola package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/cola.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. - See Martin Grigorov's blog post for how to debug Linux ARM64 related issues on a x86_64 host. |
Package: cola |
Version: 2.13.0 |
Command: /home/biocbuild/R/R/bin/R CMD check --install=check:cola.install-out.txt --library=/home/biocbuild/R/R/site-library --no-vignettes --timings cola_2.13.0.tar.gz |
StartedAt: 2024-12-24 05:32:12 -0000 (Tue, 24 Dec 2024) |
EndedAt: 2024-12-24 05:36:08 -0000 (Tue, 24 Dec 2024) |
EllapsedTime: 236.2 seconds |
RetCode: 0 |
Status: WARNINGS |
CheckDir: cola.Rcheck |
Warnings: 6 |
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/R/R/bin/R CMD check --install=check:cola.install-out.txt --library=/home/biocbuild/R/R/site-library --no-vignettes --timings cola_2.13.0.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/home/biocbuild/bbs-3.21-bioc/meat/cola.Rcheck’ * using R Under development (unstable) (2024-11-24 r87369) * using platform: aarch64-unknown-linux-gnu * R was compiled by aarch64-unknown-linux-gnu-gcc (GCC) 14.2.0 GNU Fortran (GCC) 14.2.0 * running under: openEuler 24.03 (LTS) * using session charset: UTF-8 * using option ‘--no-vignettes’ * checking for file ‘cola/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘cola’ version ‘2.13.0’ * checking package namespace information ... OK * checking package dependencies ... INFO Imports includes 27 non-default packages. Importing from so many packages makes the package vulnerable to any of them becoming unavailable. Move as many as possible to Suggests and use conditionally. * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘cola’ can be installed ... WARNING Found the following significant warnings: Warning: program compiled against libxml 212 using older 211 See ‘/home/biocbuild/bbs-3.21-bioc/meat/cola.Rcheck/00install.out’ for details. * used C++ compiler: ‘aarch64-unknown-linux-gnu-g++ (GCC) 14.2.0’ * checking installed package size ... INFO installed size is 7.7Mb sub-directories of 1Mb or more: data 3.2Mb extdata 1.0Mb libs 2.1Mb * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... NOTE Warning: program compiled against libxml 212 using older 211 A namespace must be able to be loaded with just the base namespace loaded: otherwise if the namespace gets loaded by a saved object, the session will be unable to start. Probably some imports need to be declared in the NAMESPACE file. * checking whether the namespace can be unloaded cleanly ... OK * checking loading without being on the library search path ... OK * checking whether startup messages can be suppressed ... NOTE Warning: program compiled against libxml 212 using older 211 It looks like this package (or a package it requires) has a startup message which cannot be suppressed: see ?packageStartupMessage. * checking dependencies in R code ... NOTE Warning: program compiled against libxml 212 using older 211 * checking S3 generic/method consistency ... WARNING Warning: program compiled against libxml 212 using older 211 See section ‘Generic functions and methods’ in the ‘Writing R Extensions’ manual. * checking replacement functions ... WARNING Warning: program compiled against libxml 212 using older 211 The argument of a replacement function which corresponds to the right hand side must be named ‘value’. * checking foreign function calls ... NOTE Warning: program compiled against libxml 212 using older 211 See chapter ‘System and foreign language interfaces’ in the ‘Writing R Extensions’ manual. * checking R code for possible problems ... NOTE Warning: program compiled against libxml 212 using older 211 * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... NOTE Found the following Rd file(s) with Rd \link{} targets missing package anchors: predict_classes-ConsensusPartition-method.Rd: colorRamp2 predict_classes-matrix-method.Rd: colorRamp2 Please provide package anchors for all Rd \link{} targets not in the package itself and the base packages. * checking for missing documentation entries ... WARNING Warning: program compiled against libxml 212 using older 211 All user-level objects in a package should have documentation entries. See chapter ‘Writing R documentation files’ in the ‘Writing R Extensions’ manual. * checking for code/documentation mismatches ... WARNING Warning: program compiled against libxml 212 using older 211 Warning: program compiled against libxml 212 using older 211 Warning: program compiled against libxml 212 using older 211 * checking Rd \usage sections ... NOTE Warning: program compiled against libxml 212 using older 211 The \usage entries for S3 methods should use the \method markup and not their full name. See chapter ‘Writing R documentation files’ in the ‘Writing R Extensions’ manual. * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... WARNING Warning: program compiled against libxml 212 using older 211 * checking data for ASCII and uncompressed saves ... OK * checking line endings in C/C++/Fortran sources/headers ... OK * checking compiled code ... NOTE Note: information on .o files is not available * checking files in ‘vignettes’ ... OK * checking examples ... OK Examples with CPU (user + system) or elapsed time > 5s user system elapsed consensus_partition 30.104 0.407 30.588 compare_signatures-HierarchicalPartition-method 6.167 0.187 6.376 get_signatures-ConsensusPartition-method 6.090 0.036 6.140 * checking for unstated dependencies in ‘tests’ ... OK * checking tests ... Running ‘test-all.R’ OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: 6 WARNINGs, 8 NOTEs See ‘/home/biocbuild/bbs-3.21-bioc/meat/cola.Rcheck/00check.log’ for details.
cola.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/R/R/bin/R CMD INSTALL cola ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library’ * installing *source* package ‘cola’ ... ** using staged installation ** libs using C++ compiler: ‘aarch64-unknown-linux-gnu-g++ (GCC) 14.2.0’ /opt/ohpc/pub/compiler/gcc/14.2.0/bin/aarch64-unknown-linux-gnu-g++ -std=gnu++17 -I"/home/biocbuild/R/R/include" -DNDEBUG -I'/home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library/Rcpp/include' -I/usr/local/include -fPIC -g -O2 -Wall -Werror=format-security -DR_NO_REMAP -c RcppExports.cpp -o RcppExports.o /opt/ohpc/pub/compiler/gcc/14.2.0/bin/aarch64-unknown-linux-gnu-g++ -std=gnu++17 -I"/home/biocbuild/R/R/include" -DNDEBUG -I'/home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library/Rcpp/include' -I/usr/local/include -fPIC -g -O2 -Wall -Werror=format-security -DR_NO_REMAP -c atc.cpp -o atc.o /opt/ohpc/pub/compiler/gcc/14.2.0/bin/aarch64-unknown-linux-gnu-g++ -std=gnu++17 -I"/home/biocbuild/R/R/include" -DNDEBUG -I'/home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library/Rcpp/include' -I/usr/local/include -fPIC -g -O2 -Wall -Werror=format-security -DR_NO_REMAP -c cal_consensus_mat.cpp -o cal_consensus_mat.o /opt/ohpc/pub/compiler/gcc/14.2.0/bin/aarch64-unknown-linux-gnu-g++ -std=gnu++17 -I"/home/biocbuild/R/R/include" -DNDEBUG -I'/home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library/Rcpp/include' -I/usr/local/include -fPIC -g -O2 -Wall -Werror=format-security -DR_NO_REMAP -c pdist.cpp -o pdist.o /opt/ohpc/pub/compiler/gcc/14.2.0/bin/aarch64-unknown-linux-gnu-g++ -std=gnu++17 -shared -L/home/biocbuild/R/R/lib -L/usr/local/lib -o cola.so RcppExports.o atc.o cal_consensus_mat.o pdist.o -L/home/biocbuild/R/R/lib -lR installing to /home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library/00LOCK-cola/00new/cola/libs ** R ** data ** inst ** byte-compile and prepare package for lazy loading Warning: program compiled against libxml 212 using older 211 ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location Warning: program compiled against libxml 212 using older 211 ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location Warning: program compiled against libxml 212 using older 211 ** testing if installed package keeps a record of temporary installation path * DONE (cola)
cola.Rcheck/tests/test-all.Rout
R Under development (unstable) (2024-11-24 r87369) -- "Unsuffered Consequences" Copyright (C) 2024 The R Foundation for Statistical Computing Platform: aarch64-unknown-linux-gnu R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. Type 'license()' or 'licence()' for distribution details. R is a collaborative project with many contributors. Type 'contributors()' for more information and 'citation()' on how to cite R or R packages in publications. Type 'demo()' for some demos, 'help()' for on-line help, or 'help.start()' for an HTML browser interface to help. Type 'q()' to quit R. > library(testthat) > suppressWarnings(suppressPackageStartupMessages(library(cola))) Warning: program compiled against libxml 212 using older 211 > > test_check("cola") [ FAIL 0 | WARN 0 | SKIP 0 | PASS 18 ] > > > proc.time() user system elapsed 6.592 0.273 6.866
cola.Rcheck/cola-Ex.timings
name | user | system | elapsed | |
ATC | 0.153 | 0.004 | 0.158 | |
ATC_approx | 0 | 0 | 0 | |
ConsensusPartition-class | 0 | 0 | 0 | |
ConsensusPartitionList-class | 0 | 0 | 0 | |
DownSamplingConsensusPartition-class | 0 | 0 | 0 | |
Extract.ConsensusPartitionList | 0.553 | 0.016 | 0.571 | |
Extract.HierarchicalPartition | 0.276 | 0.060 | 0.337 | |
ExtractExtract.ConsensusPartitionList | 0.179 | 0.024 | 0.203 | |
ExtractExtract.HierarchicalPartition | 0 | 0 | 0 | |
FCC | 0.180 | 0.032 | 0.212 | |
HierarchicalPartition-class | 0.001 | 0.000 | 0.000 | |
PAC | 0.480 | 0.227 | 0.709 | |
aPAC | 0.144 | 0.004 | 0.149 | |
adjust_matrix | 0.004 | 0.004 | 0.008 | |
adjust_outlier | 0.000 | 0.000 | 0.001 | |
all_leaves-HierarchicalPartition-method | 0.120 | 0.004 | 0.125 | |
all_nodes-HierarchicalPartition-method | 0.135 | 0.000 | 0.135 | |
all_partition_methods | 0.002 | 0.000 | 0.002 | |
all_top_value_methods | 0 | 0 | 0 | |
cola | 0.081 | 0.004 | 0.085 | |
cola_opt | 0.025 | 0.008 | 0.032 | |
cola_report-ConsensusPartition-method | 0 | 0 | 0 | |
cola_report-ConsensusPartitionList-method | 0.000 | 0.000 | 0.001 | |
cola_report-HierarchicalPartition-method | 0 | 0 | 0 | |
cola_report-dispatch | 0 | 0 | 0 | |
cola_rl | 0.083 | 0.000 | 0.083 | |
collect_classes-ConsensusPartition-method | 2.637 | 0.056 | 2.705 | |
collect_classes-ConsensusPartitionList-method | 4.417 | 0.068 | 4.495 | |
collect_classes-HierarchicalPartition-method | 1.787 | 0.040 | 1.831 | |
collect_classes-dispatch | 0 | 0 | 0 | |
collect_plots-ConsensusPartition-method | 0 | 0 | 0 | |
collect_plots-ConsensusPartitionList-method | 0 | 0 | 0 | |
collect_plots-dispatch | 0 | 0 | 0 | |
collect_stats-ConsensusPartition-method | 0 | 0 | 0 | |
collect_stats-ConsensusPartitionList-method | 0.558 | 0.004 | 0.564 | |
collect_stats-dispatch | 0 | 0 | 0 | |
colnames-ConsensusPartition-method | 0 | 0 | 0 | |
colnames-ConsensusPartitionList-method | 0 | 0 | 0 | |
colnames-DownSamplingConsensusPartition-method | 0 | 0 | 0 | |
colnames-HierarchicalPartition-method | 0 | 0 | 0 | |
colnames-dispatch | 0 | 0 | 0 | |
compare_partitions-ConsensusPartition-method | 0 | 0 | 0 | |
compare_signatures-ConsensusPartition-method | 0 | 0 | 0 | |
compare_signatures-HierarchicalPartition-method | 6.167 | 0.187 | 6.376 | |
compare_signatures-dispatch | 0 | 0 | 0 | |
concordance | 0.147 | 0.000 | 0.147 | |
config_ATC | 0.001 | 0.000 | 0.001 | |
consensus_heatmap-ConsensusPartition-method | 0.710 | 0.020 | 0.733 | |
consensus_partition | 30.104 | 0.407 | 30.588 | |
consensus_partition_by_down_sampling | 0 | 0 | 0 | |
correspond_between_rankings | 0.080 | 0.001 | 0.082 | |
correspond_between_two_rankings | 0.031 | 0.007 | 0.037 | |
david_enrichment | 0 | 0 | 0 | |
dim.ConsensusPartition | 0.001 | 0.000 | 0.000 | |
dim.ConsensusPartitionList | 0.000 | 0.000 | 0.001 | |
dim.DownSamplingConsensusPartition | 0 | 0 | 0 | |
dim.HierarchicalPartition | 0 | 0 | 0 | |
dimension_reduction-ConsensusPartition-method | 0.866 | 0.024 | 0.892 | |
dimension_reduction-DownSamplingConsensusPartition-method | 2.289 | 0.008 | 2.301 | |
dimension_reduction-HierarchicalPartition-method | 0.740 | 0.000 | 0.742 | |
dimension_reduction-dispatch | 0 | 0 | 0 | |
dimension_reduction-matrix-method | 0 | 0 | 0 | |
find_best_km | 0 | 0 | 0 | |
functional_enrichment-ANY-method | 0 | 0 | 0 | |
functional_enrichment-ConsensusPartition-method | 0.001 | 0.000 | 0.000 | |
functional_enrichment-ConsensusPartitionList-method | 0 | 0 | 0 | |
functional_enrichment-HierarchicalPartition-method | 0 | 0 | 0 | |
functional_enrichment-dispatch | 0.000 | 0.000 | 0.001 | |
get_anno-ConsensusPartition-method | 0 | 0 | 0 | |
get_anno-ConsensusPartitionList-method | 0 | 0 | 0 | |
get_anno-DownSamplingConsensusPartition-method | 0.075 | 0.000 | 0.076 | |
get_anno-HierarchicalPartition-method | 0 | 0 | 0 | |
get_anno-dispatch | 0.001 | 0.000 | 0.000 | |
get_anno_col-ConsensusPartition-method | 0 | 0 | 0 | |
get_anno_col-ConsensusPartitionList-method | 0 | 0 | 0 | |
get_anno_col-HierarchicalPartition-method | 0 | 0 | 0 | |
get_anno_col-dispatch | 0 | 0 | 0 | |
get_children_nodes-HierarchicalPartition-method | 0.001 | 0.000 | 0.000 | |
get_classes-ConsensusPartition-method | 0.145 | 0.000 | 0.145 | |
get_classes-ConsensusPartitionList-method | 0.134 | 0.008 | 0.142 | |
get_classes-DownSamplingConsensusPartition-method | 0.077 | 0.000 | 0.077 | |
get_classes-HierarchicalPartition-method | 0.131 | 0.008 | 0.139 | |
get_classes-dispatch | 0 | 0 | 0 | |
get_consensus-ConsensusPartition-method | 0.143 | 0.008 | 0.152 | |
get_matrix-ConsensusPartition-method | 0.306 | 0.096 | 0.403 | |
get_matrix-ConsensusPartitionList-method | 0.302 | 0.084 | 0.386 | |
get_matrix-DownSamplingConsensusPartition-method | 0 | 0 | 0 | |
get_matrix-HierarchicalPartition-method | 0 | 0 | 0 | |
get_matrix-dispatch | 0 | 0 | 0 | |
get_membership-ConsensusPartition-method | 0.138 | 0.008 | 0.146 | |
get_membership-ConsensusPartitionList-method | 0.134 | 0.004 | 0.139 | |
get_membership-dispatch | 0 | 0 | 0 | |
get_param-ConsensusPartition-method | 0.144 | 0.004 | 0.148 | |
get_signatures-ConsensusPartition-method | 6.090 | 0.036 | 6.140 | |
get_signatures-DownSamplingConsensusPartition-method | 0 | 0 | 0 | |
get_signatures-HierarchicalPartition-method | 0 | 0 | 0 | |
get_signatures-dispatch | 0.000 | 0.000 | 0.001 | |
get_stats-ConsensusPartition-method | 0.135 | 0.008 | 0.142 | |
get_stats-ConsensusPartitionList-method | 0.194 | 0.004 | 0.199 | |
get_stats-dispatch | 0 | 0 | 0 | |
golub_cola | 0.173 | 0.008 | 0.182 | |
golub_cola_ds | 0.109 | 0.000 | 0.110 | |
golub_cola_rh | 0.180 | 0.012 | 0.192 | |
hierarchical_partition | 0.001 | 0.000 | 0.001 | |
is_best_k-ConsensusPartition-method | 0.135 | 0.007 | 0.143 | |
is_best_k-ConsensusPartitionList-method | 0.821 | 0.043 | 0.866 | |
is_best_k-dispatch | 0 | 0 | 0 | |
is_leaf_node-HierarchicalPartition-method | 0.117 | 0.000 | 0.117 | |
is_stable_k-ConsensusPartition-method | 0.141 | 0.004 | 0.146 | |
is_stable_k-ConsensusPartitionList-method | 0.147 | 0.004 | 0.151 | |
is_stable_k-dispatch | 0 | 0 | 0 | |
knee_finder2 | 0.029 | 0.000 | 0.029 | |
knitr_add_tab_item | 0 | 0 | 0 | |
knitr_insert_tabs | 0 | 0 | 0 | |
map_to_entrez_id | 0 | 0 | 0 | |
max_depth-HierarchicalPartition-method | 0.117 | 0.000 | 0.117 | |
membership_heatmap-ConsensusPartition-method | 0.593 | 0.000 | 0.594 | |
merge_node-HierarchicalPartition-method | 0 | 0 | 0 | |
merge_node_param | 0 | 0 | 0 | |
ncol-ConsensusPartition-method | 0 | 0 | 0 | |
ncol-ConsensusPartitionList-method | 0 | 0 | 0 | |
ncol-DownSamplingConsensusPartition-method | 0 | 0 | 0 | |
ncol-HierarchicalPartition-method | 0 | 0 | 0 | |
ncol-dispatch | 0.000 | 0.000 | 0.001 | |
node_info-HierarchicalPartition-method | 0.001 | 0.000 | 0.000 | |
node_level-HierarchicalPartition-method | 0 | 0 | 0 | |
nrow-ConsensusPartition-method | 0 | 0 | 0 | |
nrow-ConsensusPartitionList-method | 0 | 0 | 0 | |
nrow-HierarchicalPartition-method | 0 | 0 | 0 | |
nrow-dispatch | 0 | 0 | 0 | |
plot_ecdf-ConsensusPartition-method | 0.148 | 0.004 | 0.152 | |
predict_classes-ConsensusPartition-method | 0 | 0 | 0 | |
predict_classes-dispatch | 0 | 0 | 0 | |
predict_classes-matrix-method | 0.000 | 0.000 | 0.001 | |
print.hc_table_suggest_best_k | 0 | 0 | 0 | |
recalc_stats | 0 | 0 | 0 | |
register_NMF | 0 | 0 | 0 | |
register_SOM | 0 | 0 | 0 | |
register_partition_methods | 0.686 | 0.000 | 0.688 | |
register_top_value_methods | 0.002 | 0.000 | 0.001 | |
relabel_class | 0.010 | 0.000 | 0.011 | |
remove_partition_methods | 0 | 0 | 0 | |
remove_top_value_methods | 0 | 0 | 0 | |
rownames-ConsensusPartition-method | 0 | 0 | 0 | |
rownames-ConsensusPartitionList-method | 0 | 0 | 0 | |
rownames-HierarchicalPartition-method | 0.001 | 0.000 | 0.000 | |
rownames-dispatch | 0 | 0 | 0 | |
run_all_consensus_partition_methods | 0 | 0 | 0 | |
select_partition_number-ConsensusPartition-method | 0.152 | 0.004 | 0.156 | |
show-ConsensusPartition-method | 0 | 0 | 0 | |
show-ConsensusPartitionList-method | 0 | 0 | 0 | |
show-DownSamplingConsensusPartition-method | 0.104 | 0.004 | 0.109 | |
show-HierarchicalPartition-method | 0.165 | 0.008 | 0.174 | |
show-dispatch | 0 | 0 | 0 | |
split_node-HierarchicalPartition-method | 0 | 0 | 0 | |
suggest_best_k-ConsensusPartition-method | 0.138 | 0.004 | 0.142 | |
suggest_best_k-ConsensusPartitionList-method | 0.148 | 0.004 | 0.152 | |
suggest_best_k-HierarchicalPartition-method | 0.125 | 0.000 | 0.125 | |
suggest_best_k-dispatch | 0 | 0 | 0 | |
test_between_factors | 0.012 | 0.000 | 0.011 | |
test_to_known_factors-ConsensusPartition-method | 0.158 | 0.008 | 0.167 | |
test_to_known_factors-ConsensusPartitionList-method | 0.312 | 0.000 | 0.313 | |
test_to_known_factors-DownSamplingConsensusPartition-method | 0.103 | 0.004 | 0.106 | |
test_to_known_factors-HierarchicalPartition-method | 0.131 | 0.004 | 0.135 | |
test_to_known_factors-dispatch | 0 | 0 | 0 | |
top_elements_overlap | 0.299 | 0.000 | 0.300 | |
top_rows_heatmap-ConsensusPartition-method | 0 | 0 | 0 | |
top_rows_heatmap-ConsensusPartitionList-method | 0.000 | 0.000 | 0.001 | |
top_rows_heatmap-HierarchicalPartition-method | 0 | 0 | 0 | |
top_rows_heatmap-dispatch | 0 | 0 | 0 | |
top_rows_heatmap-matrix-method | 4.416 | 0.092 | 4.519 | |
top_rows_overlap-ConsensusPartitionList-method | 0.926 | 0.000 | 0.928 | |
top_rows_overlap-HierarchicalPartition-method | 0.592 | 0.004 | 0.596 | |
top_rows_overlap-dispatch | 0.001 | 0.000 | 0.000 | |
top_rows_overlap-matrix-method | 0.179 | 0.000 | 0.179 | |