Gundula Povysil
| Snapshot Date: 2024-11-24 13:40 -0500 (Sun, 24 Nov 2024) |
| git_url: https://git.bioconductor.org/packages/cn.mops |
| git_branch: devel |
| git_last_commit: 3abd26d |
| git_last_commit_date: 2024-10-29 09:39:23 -0500 (Tue, 29 Oct 2024) |
| Back to Multiple platform build/check report for BioC 3.21: simplified long |
|
This page was generated on 2024-11-25 11:37 -0500 (Mon, 25 Nov 2024).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 24.04.1 LTS) | x86_64 | R Under development (unstable) (2024-10-21 r87258) -- "Unsuffered Consequences" | 4748 |
| palomino7 | Windows Server 2022 Datacenter | x64 | R Under development (unstable) (2024-10-26 r87273 ucrt) -- "Unsuffered Consequences" | 4459 |
| lconway | macOS 12.7.1 Monterey | x86_64 | R Under development (unstable) (2024-11-20 r87352) -- "Unsuffered Consequences" | 4349 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 379/2272 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| cn.mops 1.53.0 (landing page) Gundula Povysil
| nebbiolo1 | Linux (Ubuntu 24.04.1 LTS) / x86_64 | ERROR | ERROR | skipped | |||||||||
| palomino7 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | | ||||||||
| lconway | macOS 12.7.1 Monterey / x86_64 | ERROR | ERROR | skipped | skipped | |||||||||
|
To the developers/maintainers of the cn.mops package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/cn.mops.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: cn.mops |
| Version: 1.53.0 |
| Command: /home/biocbuild/bbs-3.21-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data cn.mops |
| StartedAt: 2024-11-24 16:33:14 -0500 (Sun, 24 Nov 2024) |
| EndedAt: 2024-11-24 16:33:16 -0500 (Sun, 24 Nov 2024) |
| EllapsedTime: 2.0 seconds |
| RetCode: 1 |
| Status: ERROR |
| PackageFile: None |
| PackageFileSize: NA |
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### Running command:
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### /home/biocbuild/bbs-3.21-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data cn.mops
###
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* checking for file ‘cn.mops/DESCRIPTION’ ... OK
* preparing ‘cn.mops’:
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to build vignettes
-----------------------------------
* installing *source* package ‘cn.mops’ ...
** using staged installation
** libs
using C compiler: ‘gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0’
using C++ compiler: ‘g++ (Ubuntu 13.2.0-23ubuntu4) 13.2.0’
gcc -I"/home/biocbuild/bbs-3.21-bioc/R/include" -DNDEBUG -I/usr/local/include -DSTRICT_R_HEADERS=1 -fpic -g -O2 -Wall -c R_init_cnmops.c -o R_init_cnmops.o
g++ -std=gnu++17 -I"/home/biocbuild/bbs-3.21-bioc/R/include" -DNDEBUG -I/usr/local/include -DSTRICT_R_HEADERS=1 -fpic -g -O2 -Wall -DR_NO_REMAP -c cnmops.cpp -o cnmops.o
cnmops.cpp: In function ‘SEXPREC* cnmops(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)’:
cnmops.cpp:18:17: error: ‘length’ was not declared in this scope
18 | int N = length(xS);
| ^~~~~~
cnmops.cpp:30:30: error: expected primary-expression before ‘double’
30 | double *lg=Calloc(N, double);
| ^~~~~~
cnmops.cpp:30:20: error: ‘Calloc’ was not declared in this scope; did you mean ‘calloc’?
30 | double *lg=Calloc(N, double);
| ^~~~~~
| calloc
In file included from cnmops.cpp:8:
cnmops.cpp:42:32: error: ‘allocMatrix’ was not declared in this scope; did you mean ‘Rf_allocMatrix’?
42 | PROTECT(alpha_ik_RET = allocMatrix(REALSXP, n, N));
| ^~~~~~~~~~~
/home/biocbuild/bbs-3.21-bioc/R/include/Rinternals.h:388:36: note: in definition of macro ‘PROTECT’
388 | #define PROTECT(s) Rf_protect(s)
| ^
cnmops.cpp:46:31: error: ‘allocVector’ was not declared in this scope; did you mean ‘Rf_allocVector’?
46 | PROTECT(alpha_i_RET = allocVector(REALSXP, n));
| ^~~~~~~~~~~
/home/biocbuild/bbs-3.21-bioc/R/include/Rinternals.h:388:36: note: in definition of macro ‘PROTECT’
388 | #define PROTECT(s) Rf_protect(s)
| ^
cnmops.cpp:113:9: error: ‘Free’ was not declared in this scope; did you mean ‘free’?
113 | Free(lg);
| ^~~~
| free
cnmops.cpp:117:37: error: ‘mkChar’ was not declared in this scope
117 | SET_STRING_ELT(namesRET, 0, mkChar("alpha.ik"));
| ^~~~~~
cnmops.cpp:128:9: error: ‘setAttrib’ was not declared in this scope; did you mean ‘Rf_setAttrib’?
128 | setAttrib(RET, R_NamesSymbol, namesRET);
| ^~~~~~~~~
| Rf_setAttrib
make: *** [/home/biocbuild/bbs-3.21-bioc/R/etc/Makeconf:202: cnmops.o] Error 1
ERROR: compilation failed for package ‘cn.mops’
* removing ‘/tmp/Rtmppejiki/Rinst3b402d6c61d8/cn.mops’
-----------------------------------
ERROR: package installation failed