Multiple platform build/check report for BioC 3.21 - INSTALL results for cisPath on kunpeng2

Hostname	OS	Arch (*)	R version	Installed pkgs
nebbiolo1	Linux (Ubuntu 24.04.1 LTS)	x86_64	R Under development (unstable) (2024-10-21 r87258) -- "Unsuffered Consequences"	4754
palomino7	Windows Server 2022 Datacenter	x64	R Under development (unstable) (2024-10-26 r87273 ucrt) -- "Unsuffered Consequences"	4472
lconway	macOS 12.7.1 Monterey	x86_64	R Under development (unstable) (2024-11-20 r87352) -- "Unsuffered Consequences"	4426
kjohnson3	macOS 13.7.1 Ventura	arm64	R Under development (unstable) (2024-11-20 r87352) -- "Unsuffered Consequences"	4381
kunpeng2	Linux (openEuler 22.03 LTS-SP1)	aarch64	R Under development (unstable) (2024-11-24 r87369) -- "Unsuffered Consequences"	4372
Click on any hostname to see more info about the system (e.g. compilers) () as reported by 'uname -p', except on Windows and Mac OS X*

INSTALL results for cisPath on kunpeng2

To the developers/maintainers of the cisPath package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/cisPath.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.
- See Martin Grigorov's blog post for how to debug Linux ARM64 related issues on a x86_64 host.

raw results

Summary

Package: cisPath

Version: 1.47.0

Command: /home/biocbuild/R/R/bin/R CMD INSTALL cisPath

StartedAt: 2024-12-22 19:41:46 -0000 (Sun, 22 Dec 2024)

EndedAt: 2024-12-22 19:42:16 -0000 (Sun, 22 Dec 2024)

EllapsedTime: 30.6 seconds

RetCode: 1

Status: ERROR

Command output

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###
### Running command:
###
###   /home/biocbuild/R/R/bin/R CMD INSTALL cisPath
###
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* installing to library ‘/home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library’
* installing *source* package ‘cisPath’ ...
** using staged installation
** libs
using C++ compiler: ‘aarch64-unknown-linux-gnu-g++ (GCC) 14.2.0’
/opt/ohpc/pub/compiler/gcc/14.2.0/bin/aarch64-unknown-linux-gnu-g++ -std=gnu++17 -I"/home/biocbuild/R/R/include" -DNDEBUG   -I/usr/local/include    -fPIC  -g -O2  -Wall -Werror=format-security -DR_NO_REMAP -c cisPath.cpp -o cisPath.o
cisPath.cpp: In function ‘bool processWebInput(const char*, bool, bool)’:
cisPath.cpp:3555:27: error: format not a string literal and no format arguments [-Werror=format-security]
 3555 |             PRINTFUNCTION(buffer);
      |                           ^~~~~~
cc1plus: some warnings being treated as errors
make: *** [/home/biocbuild/R/R/etc/Makeconf:204: cisPath.o] Error 1
ERROR: compilation failed for package ‘cisPath’
* removing ‘/home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library/cisPath’
* restoring previous ‘/home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library/cisPath’