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This page was generated on 2025-04-09 11:56 -0400 (Wed, 09 Apr 2025).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 24.04.1 LTS) | x86_64 | 4.5.0 beta (2025-04-02 r88102) -- "How About a Twenty-Six" | 4737 |
| palomino8 | Windows Server 2022 Datacenter | x64 | 4.5.0 RC (2025-04-03 r88103 ucrt) -- "How About a Twenty-Six" | 4524 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 355/2335 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
Aaron Taudt
| nebbiolo2 | Linux (Ubuntu 24.04.1 LTS) / x86_64 | ERROR | ERROR | skipped | |||||||||
| palomino8 | Windows Server 2022 Datacenter / x64 | ERROR | ERROR | skipped | skipped | |||||||||
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To the developers/maintainers of the chromstaR package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/chromstaR.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: chromstaR |
| Version: 1.33.1 |
| Command: F:\biocbuild\bbs-3.22-bioc\R\bin\R.exe CMD INSTALL chromstaR |
| StartedAt: 2025-04-08 16:30:07 -0400 (Tue, 08 Apr 2025) |
| EndedAt: 2025-04-08 16:30:15 -0400 (Tue, 08 Apr 2025) |
| EllapsedTime: 7.9 seconds |
| RetCode: 1 |
| Status: ERROR |
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### Running command:
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### F:\biocbuild\bbs-3.22-bioc\R\bin\R.exe CMD INSTALL chromstaR
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* installing to library 'F:/biocbuild/bbs-3.22-bioc/R/library'
* installing *source* package 'chromstaR' ...
** this is package 'chromstaR' version '1.33.1'
** using staged installation
** libs
using C++ compiler: 'G__~1.EXE (GCC) 14.2.0'
g++ -std=gnu++17 -I"F:/biocbuild/bbs-3.22-bioc/R/include" -DNDEBUG -I"C:/rtools45/x86_64-w64-mingw32.static.posix/include" -fopenmp -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c R_interface.cpp -o R_interface.o
g++ -std=gnu++17 -I"F:/biocbuild/bbs-3.22-bioc/R/include" -DNDEBUG -I"C:/rtools45/x86_64-w64-mingw32.static.posix/include" -fopenmp -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c densities.cpp -o densities.o
densities.cpp: In constructor 'ZiNB::ZiNB(int*, int, double, double, double)':
densities.cpp:25:66: error: expected primary-expression before 'double'
25 | this->lxfactorials = (double*) Calloc(max_obs+1, double);
| ^~~~~~
densities.cpp:25:48: error: 'Calloc' was not declared in this scope; did you mean 'calloc'?
25 | this->lxfactorials = (double*) Calloc(max_obs+1, double);
| ^~~~~~
| calloc
densities.cpp: In destructor 'virtual ZiNB::~ZiNB()':
densities.cpp:40:17: error: 'Free' was not declared in this scope; did you mean 'free'?
40 | Free(this->lxfactorials);
| ^~~~
| free
densities.cpp: In constructor 'NegativeBinomial::NegativeBinomial(int*, int, double, double)':
densities.cpp:347:66: error: expected primary-expression before 'double'
347 | this->lxfactorials = (double*) Calloc(max_obs+1, double);
| ^~~~~~
densities.cpp:347:48: error: 'Calloc' was not declared in this scope; did you mean 'calloc'?
347 | this->lxfactorials = (double*) Calloc(max_obs+1, double);
| ^~~~~~
| calloc
densities.cpp: In destructor 'virtual NegativeBinomial::~NegativeBinomial()':
densities.cpp:362:17: error: 'Free' was not declared in this scope; did you mean 'free'?
362 | Free(this->lxfactorials);
| ^~~~
| free
densities.cpp: In member function 'virtual void MVCopulaApproximation::calc_logdensities(double*)':
densities.cpp:881:50: error: expected primary-expression before 'double'
881 | double* z = (double*) Calloc(this->Nmod, double);
| ^~~~~~
densities.cpp:881:31: error: 'Calloc' was not declared in this scope; did you mean 'calloc'?
881 | double* z = (double*) Calloc(this->Nmod, double);
| ^~~~~~
| calloc
densities.cpp:976:9: error: 'Free' was not declared in this scope; did you mean 'free'?
976 | Free(z);
| ^~~~
| free
make: *** [F:/biocbuild/bbs-3.22-bioc/R/etc/x64/Makeconf:296: densities.o] Error 1
ERROR: compilation failed for package 'chromstaR'
* removing 'F:/biocbuild/bbs-3.22-bioc/R/library/chromstaR'