Multiple platform build/check report for BioC 3.21 - INSTALL results for chromstaR on kjohnson3

Hostname	OS	Arch (*)	R version	Installed pkgs
nebbiolo1	Linux (Ubuntu 24.04.1 LTS)	x86_64	R Under development (unstable) (2024-10-21 r87258) -- "Unsuffered Consequences"	4754
palomino7	Windows Server 2022 Datacenter	x64	R Under development (unstable) (2024-10-26 r87273 ucrt) -- "Unsuffered Consequences"	4472
lconway	macOS 12.7.1 Monterey	x86_64	R Under development (unstable) (2024-11-20 r87352) -- "Unsuffered Consequences"	4426
kjohnson3	macOS 13.7.1 Ventura	arm64	R Under development (unstable) (2024-11-20 r87352) -- "Unsuffered Consequences"	4381
kunpeng2	Linux (openEuler 22.03 LTS-SP1)	aarch64	R Under development (unstable) (2024-11-24 r87369) -- "Unsuffered Consequences"	4373
Click on any hostname to see more info about the system (e.g. compilers) () as reported by 'uname -p', except on Windows and Mac OS X*

INSTALL results for chromstaR on kjohnson3

To the developers/maintainers of the chromstaR package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/chromstaR.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results

Summary

Package: chromstaR

Version: 1.33.1

Command: /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL chromstaR

StartedAt: 2024-12-23 15:08:02 -0500 (Mon, 23 Dec 2024)

EndedAt: 2024-12-23 15:08:03 -0500 (Mon, 23 Dec 2024)

EllapsedTime: 1.0 seconds

RetCode: 1

Status: ERROR

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL chromstaR
###
##############################################################################
##############################################################################


* installing to library ‘/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library’
* installing *source* package ‘chromstaR’ ...
** using staged installation
** libs
using C++ compiler: ‘Apple clang version 15.0.0 (clang-1500.1.0.2.5)’
using SDK: ‘MacOSX11.3.sdk’
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -DR_NO_REMAP -c R_interface.cpp -o R_interface.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -DR_NO_REMAP -c densities.cpp -o densities.o
densities.cpp:25:58: error: expected '(' for function-style cast or type construction
                this->lxfactorials = (double*) Calloc(max_obs+1, double);
                                                                 ~~~~~~^
densities.cpp:40:3: error: use of undeclared identifier 'Free'; did you mean 'free'?
                Free(this->lxfactorials);
                ^~~~
                free
/Library/Developer/CommandLineTools/SDKs/MacOSX11.sdk/usr/include/malloc/_malloc.h:42:7: note: 'free' declared here
void     free(void *);
         ^
densities.cpp:347:58: error: expected '(' for function-style cast or type construction
                this->lxfactorials = (double*) Calloc(max_obs+1, double);
                                                                 ~~~~~~^
densities.cpp:362:3: error: use of undeclared identifier 'Free'; did you mean 'free'?
                Free(this->lxfactorials);
                ^~~~
                free
/Library/Developer/CommandLineTools/SDKs/MacOSX11.sdk/usr/include/malloc/_malloc.h:42:7: note: 'free' declared here
void     free(void *);
         ^
densities.cpp:881:49: error: expected '(' for function-style cast or type construction
        double* z = (double*) Calloc(this->Nmod, double);
                                                 ~~~~~~^
densities.cpp:976:2: error: use of undeclared identifier 'Free'; did you mean 'free'?
        Free(z);
        ^~~~
        free
/Library/Developer/CommandLineTools/SDKs/MacOSX11.sdk/usr/include/malloc/_malloc.h:42:7: note: 'free' declared here
void     free(void *);
         ^
6 errors generated.
make: *** [densities.o] Error 1
ERROR: compilation failed for package ‘chromstaR’
* removing ‘/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library/chromstaR’