| Back to Multiple platform build/check report for BioC 3.22: simplified long |
|
This page was generated on 2025-10-29 12:06 -0400 (Wed, 29 Oct 2025).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 24.04.3 LTS) | x86_64 | 4.5.1 Patched (2025-08-23 r88802) -- "Great Square Root" | 4901 |
| lconway | macOS 12.7.6 Monterey | x86_64 | 4.5.1 Patched (2025-09-10 r88807) -- "Great Square Root" | 4691 |
| kjohnson3 | macOS 13.7.7 Ventura | arm64 | 4.5.1 Patched (2025-09-10 r88807) -- "Great Square Root" | 4637 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 312/2361 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| cellmig 0.99.16 (landing page) Simo Kitanovski
| nebbiolo2 | Linux (Ubuntu 24.04.3 LTS) / x86_64 | OK | ERROR | skipped | |||||||||
| lconway | macOS 12.7.6 Monterey / x86_64 | OK | ERROR | skipped | skipped | |||||||||
| kjohnson3 | macOS 13.7.7 Ventura / arm64 | OK | ERROR | skipped | skipped | |||||||||
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To the developers/maintainers of the cellmig package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/cellmig.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: cellmig |
| Version: 0.99.16 |
| Command: /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data cellmig |
| StartedAt: 2025-10-28 16:21:56 -0400 (Tue, 28 Oct 2025) |
| EndedAt: 2025-10-28 16:29:37 -0400 (Tue, 28 Oct 2025) |
| EllapsedTime: 461.8 seconds |
| RetCode: 1 |
| Status: ERROR |
| PackageFile: None |
| PackageFileSize: NA |
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### Running command:
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### /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data cellmig
###
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* checking for file ‘cellmig/DESCRIPTION’ ... OK
* preparing ‘cellmig’:
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘User_manual_analysis.Rmd’ using rmarkdown
2025-10-28 16:24:40.530 R[76779:658653119] XType: com.apple.fonts is not accessible.
2025-10-28 16:24:40.531 R[76779:658653119] XType: XTFontStaticRegistry is enabled.
Quitting from User_manual_analysis.Rmd:221-224 [unnamed-chunk-9]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `adjust_hclust_tip.edge.len()`:
! could not find function "adjust_hclust_tip.edge.len"
---
Backtrace:
▆
1. └─cellmig::get_dose_response_profile(x = o)
2. └─ggtree::ggtree(bt$main, linetype = "solid")
3. ├─base::suppressWarnings(...)
4. │ └─base::withCallingHandlers(...)
5. ├─ggplot2::ggplot(...)
6. └─ggplot2:::ggplot.default(...)
7. ├─ggplot2::fortify(data, ...)
8. └─ggtree:::fortify.phylo(data, ...)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'User_manual_analysis.Rmd' failed with diagnostics:
could not find function "adjust_hclust_tip.edge.len"
--- failed re-building ‘User_manual_analysis.Rmd’
--- re-building ‘User_manual_simulation.Rmd’ using rmarkdown
--- finished re-building ‘User_manual_simulation.Rmd’
SUMMARY: processing the following file failed:
‘User_manual_analysis.Rmd’
Error: Vignette re-building failed.
Execution halted