| Back to Build/check report for BioC 3.23: simplified long |
|
This page was generated on 2026-02-21 11:32 -0500 (Sat, 21 Feb 2026).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 24.04.3 LTS) | x86_64 | R Under development (unstable) (2026-01-15 r89304) -- "Unsuffered Consequences" | 4871 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 237/2354 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| bnbc 1.33.0 (landing page) Kipper Fletez-Brant
| nebbiolo1 | Linux (Ubuntu 24.04.3 LTS) / x86_64 | OK | ERROR | skipped | |||||||||
| See other builds for bnbc in R Universe. | ||||||||||||||
|
To the developers/maintainers of the bnbc package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/bnbc.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: bnbc |
| Version: 1.33.0 |
| Command: /home/biocbuild/bbs-3.23-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data bnbc |
| StartedAt: 2026-02-20 16:33:49 -0500 (Fri, 20 Feb 2026) |
| EndedAt: 2026-02-20 16:34:48 -0500 (Fri, 20 Feb 2026) |
| EllapsedTime: 59.0 seconds |
| RetCode: 1 |
| Status: ERROR |
| PackageFile: None |
| PackageFileSize: NA |
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### Running command:
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### /home/biocbuild/bbs-3.23-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data bnbc
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* checking for file ‘bnbc/DESCRIPTION’ ... OK
* preparing ‘bnbc’:
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package (it is needed to process help pages)
* saving partial Rd database
* creating vignettes ... ERROR
--- re-building ‘bnbc.Rmd’ using rmarkdown
Quitting from bnbc.Rmd:131-142 [cooler_get_cg]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `write_lines()`:
! unused argument (path = config_filepath)
---
Backtrace:
▆
1. └─bnbc:::getChrCGFromCools(...)
2. └─HiCBricks::Create_many_Bricks_from_mcool(...)
3. └─HiCBricks::Create_many_Bricks(...)
4. └─HiCBricks:::.write_configuration_file(Container, Config_filepath)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'bnbc.Rmd' failed with diagnostics:
unused argument (path = config_filepath)
--- failed re-building ‘bnbc.Rmd’
SUMMARY: processing the following file failed:
‘bnbc.Rmd’
Error: Vignette re-building failed.
Execution halted