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This page was generated on 2025-10-18 12:04 -0400 (Sat, 18 Oct 2025).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 24.04.3 LTS)x86_644.5.1 Patched (2025-08-23 r88802) -- "Great Square Root" 4887
lconwaymacOS 12.7.6 Montereyx86_644.5.1 Patched (2025-09-10 r88807) -- "Great Square Root" 4677
kjohnson3macOS 13.7.7 Venturaarm644.5.1 Patched (2025-09-10 r88807) -- "Great Square Root" 4622
taishanLinux (openEuler 24.03 LTS)aarch644.5.0 (2025-04-11) -- "How About a Twenty-Six" 4632
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 64/2353HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
anansi 0.99.4  (landing page)
Thomaz Bastiaanssen
Snapshot Date: 2025-10-17 13:45 -0400 (Fri, 17 Oct 2025)
git_url: https://git.bioconductor.org/packages/anansi
git_branch: devel
git_last_commit: 369b937
git_last_commit_date: 2025-10-10 13:49:55 -0400 (Fri, 10 Oct 2025)
nebbiolo2Linux (Ubuntu 24.04.3 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
lconwaymacOS 12.7.6 Monterey / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published
kjohnson3macOS 13.7.7 Ventura / arm64  OK    OK    OK    OK  UNNEEDED, same version is already published
taishanLinux (openEuler 24.03 LTS) / aarch64  OK    OK    OK  


CHECK results for anansi on lconway

To the developers/maintainers of the anansi package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/anansi.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: anansi
Version: 0.99.4
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:anansi.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings anansi_0.99.4.tar.gz
StartedAt: 2025-10-17 20:11:15 -0400 (Fri, 17 Oct 2025)
EndedAt: 2025-10-17 20:16:36 -0400 (Fri, 17 Oct 2025)
EllapsedTime: 320.7 seconds
RetCode: 0
Status:   OK  
CheckDir: anansi.Rcheck
Warnings: 0

Command output

##############################################################################
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###
### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:anansi.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings anansi_0.99.4.tar.gz
###
##############################################################################
##############################################################################


* using log directory ‘/Users/biocbuild/bbs-3.22-bioc/meat/anansi.Rcheck’
* using R version 4.5.1 Patched (2025-09-10 r88807)
* using platform: x86_64-apple-darwin20
* R was compiled by
    Apple clang version 14.0.0 (clang-1400.0.29.202)
    GNU Fortran (GCC) 14.2.0
* running under: macOS Monterey 12.7.6
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘anansi/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘anansi’ version ‘0.99.4’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘anansi’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking whether startup messages can be suppressed ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... NOTE
Non-topic package-anchored link(s) in Rd file 'MultiFactor-methods.Rd':
  ‘[igraph:aaa-igraph-package]{igraph::igraph()}’

Non-topic package-anchored link(s) in Rd file 'anansi.Rd':
  ‘[igraph:aaa-igraph-package]{igraph::igraph}’

See section 'Cross-references' in the 'Writing R Extensions' manual.
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
            user system elapsed
plotAnansi 8.783  0.381   9.253
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘testthat.R’
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 1 NOTE
See
  ‘/Users/biocbuild/bbs-3.22-bioc/meat/anansi.Rcheck/00check.log’
for details.


Installation output

anansi.Rcheck/00install.out

##############################################################################
##############################################################################
###
### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL anansi
###
##############################################################################
##############################################################################


* installing to library ‘/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library’
* installing *source* package ‘anansi’ ...
** this is package ‘anansi’ version ‘0.99.4’
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (anansi)

Tests output

anansi.Rcheck/tests/testthat.Rout


R version 4.5.1 Patched (2025-09-10 r88807) -- "Great Square Root"
Copyright (C) 2025 The R Foundation for Statistical Computing
Platform: x86_64-apple-darwin20

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
> 
> library(testthat)
> library(anansi)
> 
> test_check("anansi")
anansi::AnansiWeb S7_object with 10 observations:
    tableY: y (12 features)
    tableX: x (8 features)
Use @ to access: tableX, tableY, dictionary, metadata.An anansi::MultiFactor S7_object,
    3 feature types across 2 edge lists.

     a  b  c
a2b 10 10  .
b2c  . 10 10

Values represent unique feature names in that edge list.

Levels:

a : 10 Levels: a_001 a_002 ... a_010 
b : 10 Levels: b_001 b_002 ... b_010 
c : 10 Levels: c_001 c_002 ... c_010 
Dropped features in tableX: 2476 remain. 
Fitting least-squares for following model:
~ x + Legend + x:Legend 
Running correlations for the following groups:
 Aged yFMT, Aged oFMT, Young yFMT
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 54 ]
> 
> proc.time()
   user  system elapsed 
 19.419   1.036  20.605 

Example timings

anansi.Rcheck/anansi-Ex.timings

nameusersystemelapsed
AnansiTale0.0020.0000.002
AnansiWeb-class0.0070.0010.009
AnansiWeb-methods0.6230.0400.668
AnansiWeb-pairwise0.0360.0140.050
MultiFactor-class0.0680.0070.076
MultiFactor-methods1.2230.0341.266
anansi-coercion0.4040.0070.415
anansi4.4750.1434.661
dictionary0.0040.0010.004
getEdgeList0.0200.0000.021
getFeaturePairs0.0030.0000.004
getGraph0.0010.0000.001
kegg_link0.5190.4991.030
linkBiobakeryMap0.0010.0000.001
metadata-set0.0030.0000.004
metadata0.0040.0010.005
pairwiseApply0.0220.0000.023
plotAnansi8.7830.3819.253
randomAnansi0.0820.0050.088
tableX0.0040.0020.005
tableY0.0030.0020.005
weaveWeb-generic1.3960.0691.477
weaveWeb-methods1.2200.0431.269