Lambda Moses
| Snapshot Date: 2025-08-11 13:45 -0400 (Mon, 11 Aug 2025) |
| git_url: https://git.bioconductor.org/packages/alabaster.sfe |
| git_branch: devel |
| git_last_commit: 021f759 |
| git_last_commit_date: 2025-04-15 13:49:17 -0400 (Tue, 15 Apr 2025) |
| Back to Multiple platform build/check report for BioC 3.22: simplified long |
|
This page was generated on 2025-08-12 12:08 -0400 (Tue, 12 Aug 2025).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 24.04.2 LTS) | x86_64 | 4.5.1 (2025-06-13) -- "Great Square Root" | 4818 |
| palomino8 | Windows Server 2022 Datacenter | x64 | 4.5.1 (2025-06-13 ucrt) -- "Great Square Root" | 4553 |
| lconway | macOS 12.7.1 Monterey | x86_64 | 4.5.1 (2025-06-13) -- "Great Square Root" | 4595 |
| kjohnson3 | macOS 13.7.1 Ventura | arm64 | 4.5.1 Patched (2025-06-14 r88325) -- "Great Square Root" | 4537 |
| taishan | Linux (openEuler 24.03 LTS) | aarch64 | 4.5.0 (2025-04-11) -- "How About a Twenty-Six" | 4535 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 50/2317 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| alabaster.sfe 1.1.0 (landing page) Lambda Moses
| nebbiolo2 | Linux (Ubuntu 24.04.2 LTS) / x86_64 | OK | OK | OK | | ||||||||
| palomino8 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | | ||||||||
| lconway | macOS 12.7.1 Monterey / x86_64 | OK | ERROR | skipped | skipped | |||||||||
| kjohnson3 | macOS 13.7.1 Ventura / arm64 | OK | OK | ERROR | OK | |||||||||
| taishan | Linux (openEuler 24.03 LTS) / aarch64 | OK | OK | OK | ||||||||||
|
To the developers/maintainers of the alabaster.sfe package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/alabaster.sfe.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: alabaster.sfe |
| Version: 1.1.0 |
| Command: /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data alabaster.sfe |
| StartedAt: 2025-08-11 15:58:20 -0400 (Mon, 11 Aug 2025) |
| EndedAt: 2025-08-11 15:59:47 -0400 (Mon, 11 Aug 2025) |
| EllapsedTime: 87.0 seconds |
| RetCode: 1 |
| Status: ERROR |
| PackageFile: None |
| PackageFileSize: NA |
##############################################################################
##############################################################################
###
### Running command:
###
### /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data alabaster.sfe
###
##############################################################################
##############################################################################
* checking for file ‘alabaster.sfe/DESCRIPTION’ ... OK
* preparing ‘alabaster.sfe’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘Overview.Rmd’ using rmarkdown
tar: Error opening archive: Unrecognized archive format
Quitting from Overview.Rmd:43-47 [unnamed-chunk-2]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `normalizePath()`:
! path[1]="/tmp/Rtmplnv21V/file8b57972c239/xenium2/xenium2": No such file or directory
---
Backtrace:
▆
1. └─SpatialFeatureExperiment::readXenium(x2, add_molecules = TRUE)
2. └─base::normalizePath(data_dir, mustWork = TRUE)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'Overview.Rmd' failed with diagnostics:
path[1]="/tmp/Rtmplnv21V/file8b57972c239/xenium2/xenium2": No such file or directory
--- failed re-building ‘Overview.Rmd’
SUMMARY: processing the following file failed:
‘Overview.Rmd’
Error: Vignette re-building failed.
Execution halted