##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/R/R/bin/R CMD check --install=check:alabaster.matrix.install-out.txt --library=/home/biocbuild/R/R/site-library --no-vignettes --timings alabaster.matrix_1.7.6.tar.gz
###
##############################################################################
##############################################################################


* using log directory ‘/home/biocbuild/bbs-3.21-bioc/meat/alabaster.matrix.Rcheck’
* using R Under development (unstable) (2024-11-24 r87369)
* using platform: aarch64-unknown-linux-gnu
* R was compiled by
    aarch64-unknown-linux-gnu-gcc (GCC) 14.2.0
    GNU Fortran (GCC) 14.2.0
* running under: openEuler 24.03 (LTS)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘alabaster.matrix/DESCRIPTION’ ... OK
* this is package ‘alabaster.matrix’ version ‘1.7.6’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘alabaster.matrix’ can be installed ... OK
* used C++ compiler: ‘aarch64-unknown-linux-gnu-g++ (GCC) 14.2.0’
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking whether startup messages can be suppressed ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... NOTE
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  AmalgamatedArray.Rd: stageObject, DelayedAbind-class
  DelayedMask.Rd: DelayedArray
  ReloadedArraySeed.Rd: readObject, saveObject, DelayedArray-class,
    DelayedUnaryIsoOp-class
  createRawArraySeed.Rd: stageObject, acquireFile, DelayedArray
  preserveDelayedOperations.Rd: DelayedArray-class, stageObject
  readArray.Rd: readObject, saveObject
  readDelayedArray.Rd: readObject, saveObject
  readSparseMatrix.Rd: readObject, saveObject
  recycleHdf5Files.Rd: stageObject, HDF5Array-class,
    H5SparseMatrix-class
  saveArray.Rd: denseMatrix-class
  saveDelayedArray.Rd: DelayedArray, DelayedArray-class, saveObject
  storeDelayedObject.Rd: DelayedArray-class, altSaveObject,
    DelayedSubset-class, altReadObject
  writeSparseMatrix.Rd: DelayedMatrix-class, H5SparseMatrix-class
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking compiled code ... NOTE
Note: information on .o files is not available
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘testthat.R’
 ERROR
Running the tests in ‘tests/testthat.R’ failed.
Last 13 lines of output:
    3. │   ├─testthat (local) .capture(...)
    4. │   │ └─base::withCallingHandlers(...)
    5. │   └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
    6. ├─alabaster.base::.writeMetadata(info, dir)
    7. │ └─alabaster.base::writeMetadata(...)
    8. │   └─jsonvalidate::json_validate(...)
    9. │     └─jsonvalidate::json_validator(...)
   10. │       └─jsonvalidate:::jsonvalidate_js()
   11. └─base::loadNamespace(x)
   12.   └─base::library.dynam(lib, package, package.lib)
   13.     └─base::dyn.load(file, DLLpath = DLLpath, ...)
  
  [ FAIL 14 | WARN 11 | SKIP 0 | PASS 753 ]
  Error: Test failures
  Execution halted
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 1 ERROR, 2 NOTEs
See
  ‘/home/biocbuild/bbs-3.21-bioc/meat/alabaster.matrix.Rcheck/00check.log’
for details.

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/R/R/bin/R CMD INSTALL alabaster.matrix
###
##############################################################################
##############################################################################


* installing to library ‘/home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library’
* installing *source* package ‘alabaster.matrix’ ...
** using staged installation
** libs
using C++ compiler: ‘aarch64-unknown-linux-gnu-g++ (GCC) 14.2.0’
/opt/ohpc/pub/compiler/gcc/14.2.0/bin/aarch64-unknown-linux-gnu-g++ -std=gnu++17 -I"/home/biocbuild/R/R/include" -DNDEBUG  -I'/home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library/Rcpp/include' -I/usr/local/include    -fPIC  -g -O2  -Wall -Werror=format-security -DR_NO_REMAP -c RcppExports.cpp -o RcppExports.o
/opt/ohpc/pub/compiler/gcc/14.2.0/bin/aarch64-unknown-linux-gnu-g++ -std=gnu++17 -I"/home/biocbuild/R/R/include" -DNDEBUG  -I'/home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library/Rcpp/include' -I/usr/local/include    -fPIC  -g -O2  -Wall -Werror=format-security -DR_NO_REMAP -c collect_attributes.cpp -o collect_attributes.o
/opt/ohpc/pub/compiler/gcc/14.2.0/bin/aarch64-unknown-linux-gnu-g++ -std=gnu++17 -shared -L/home/biocbuild/R/R/lib -L/usr/local/lib -o alabaster.matrix.so RcppExports.o collect_attributes.o -L/home/biocbuild/R/R/lib -lR
installing to /home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library/00LOCK-alabaster.matrix/00new/alabaster.matrix/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (alabaster.matrix)

R Under development (unstable) (2024-11-24 r87369) -- "Unsuffered Consequences"
Copyright (C) 2024 The R Foundation for Statistical Computing
Platform: aarch64-unknown-linux-gnu

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> library(testthat)
> library(alabaster.matrix)
Loading required package: alabaster.base
> test_check("alabaster.matrix")
Loading required package: stats4
Loading required package: Matrix
Loading required package: BiocGenerics
Loading required package: generics

Attaching package: 'generics'

The following objects are masked from 'package:base':

    as.difftime, as.factor, as.ordered, intersect, is.element, setdiff,
    setequal, union


Attaching package: 'BiocGenerics'

The following objects are masked from 'package:stats':

    IQR, mad, sd, var, xtabs

The following objects are masked from 'package:base':

    Filter, Find, Map, Position, Reduce, anyDuplicated, aperm, append,
    as.data.frame, basename, cbind, colnames, dirname, do.call,
    duplicated, eval, evalq, get, grep, grepl, is.unsorted, lapply,
    mapply, match, mget, order, paste, pmax, pmax.int, pmin, pmin.int,
    rank, rbind, rownames, sapply, saveRDS, table, tapply, unique,
    unsplit, which.max, which.min

Loading required package: MatrixGenerics
Loading required package: matrixStats

Attaching package: 'matrixStats'

The following object is masked from 'package:alabaster.base':

    anyMissing


Attaching package: 'MatrixGenerics'

The following objects are masked from 'package:matrixStats':

    colAlls, colAnyNAs, colAnys, colAvgsPerRowSet, colCollapse,
    colCounts, colCummaxs, colCummins, colCumprods, colCumsums,
    colDiffs, colIQRDiffs, colIQRs, colLogSumExps, colMadDiffs,
    colMads, colMaxs, colMeans2, colMedians, colMins, colOrderStats,
    colProds, colQuantiles, colRanges, colRanks, colSdDiffs, colSds,
    colSums2, colTabulates, colVarDiffs, colVars, colWeightedMads,
    colWeightedMeans, colWeightedMedians, colWeightedSds,
    colWeightedVars, rowAlls, rowAnyNAs, rowAnys, rowAvgsPerColSet,
    rowCollapse, rowCounts, rowCummaxs, rowCummins, rowCumprods,
    rowCumsums, rowDiffs, rowIQRDiffs, rowIQRs, rowLogSumExps,
    rowMadDiffs, rowMads, rowMaxs, rowMeans2, rowMedians, rowMins,
    rowOrderStats, rowProds, rowQuantiles, rowRanges, rowRanks,
    rowSdDiffs, rowSds, rowSums2, rowTabulates, rowVarDiffs, rowVars,
    rowWeightedMads, rowWeightedMeans, rowWeightedMedians,
    rowWeightedSds, rowWeightedVars

Loading required package: S4Vectors

Attaching package: 'S4Vectors'

The following objects are masked from 'package:Matrix':

    expand, unname

The following object is masked from 'package:utils':

    findMatches

The following objects are masked from 'package:base':

    I, expand.grid, unname

Loading required package: IRanges
Loading required package: S4Arrays
Loading required package: abind

Attaching package: 'S4Arrays'

The following object is masked from 'package:abind':

    abind

The following object is masked from 'package:base':

    rowsum

Loading required package: SparseArray

Attaching package: 'DelayedArray'

The following objects are masked from 'package:base':

    apply, scale, sweep

[ FAIL 14 | WARN 11 | SKIP 0 | PASS 753 ]

══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-AmalgamatedArray.R:32:5'): Amalgamated staging and loading works as expected ──
Error in `dyn.load(file, DLLpath = DLLpath, ...)`: unable to load shared object '/home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library/V8/libs/V8.so':
  libnode.so.72: cannot open shared object file: No such file or directory
Backtrace:
     ▆
  1. ├─alabaster.base::stageObject(mat, temp, "amalgam") at test-AmalgamatedArray.R:32:5
  2. ├─alabaster.matrix::stageObject(mat, temp, "amalgam")
  3. │ └─alabaster.matrix (local) .local(x, dir, path, child, ...)
  4. │   └─alabaster.base::.writeMetadata(meta, dir)
  5. │     └─alabaster.base::writeMetadata(...)
  6. │       └─jsonvalidate::json_validate(...)
  7. │         └─jsonvalidate::json_validator(...)
  8. │           └─jsonvalidate:::jsonvalidate_js()
  9. └─base::loadNamespace(x)
 10.   └─base::library.dynam(lib, package, package.lib)
 11.     └─base::dyn.load(file, DLLpath = DLLpath, ...)
── Error ('test-AmalgamatedArray.R:52:5'): Amalgamated staging and loading works when the inner arrays are delayed wrappers ──
Error in `dyn.load(file, DLLpath = DLLpath, ...)`: unable to load shared object '/home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library/V8/libs/V8.so':
  libnode.so.72: cannot open shared object file: No such file or directory
Backtrace:
     ▆
  1. ├─alabaster.base::stageObject(mat, temp, "amalgam") at test-AmalgamatedArray.R:52:5
  2. ├─alabaster.matrix::stageObject(mat, temp, "amalgam")
  3. │ └─alabaster.matrix (local) .local(x, dir, path, child, ...)
  4. │   └─alabaster.base::.writeMetadata(meta, dir)
  5. │     └─alabaster.base::writeMetadata(...)
  6. │       └─jsonvalidate::json_validate(...)
  7. │         └─jsonvalidate::json_validator(...)
  8. │           └─jsonvalidate:::jsonvalidate_js()
  9. └─base::loadNamespace(x)
 10.   └─base::library.dynam(lib, package, package.lib)
 11.     └─base::dyn.load(file, DLLpath = DLLpath, ...)
── Failure ('test-stage-array.R:29:5'): stageObject works as expected for the default method ──
`alabaster.base::.writeMetadata(info, dir = dir)` threw an error.
Message: unable to load shared object '/home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library/V8/libs/V8.so':
  libnode.so.72: cannot open shared object file: No such file or directory
Class:   simpleError/error/condition
Backtrace:
     ▆
  1. ├─testthat::expect_error(...) at test-stage-array.R:29:5
  2. │ └─testthat:::quasi_capture(...)
  3. │   ├─testthat (local) .capture(...)
  4. │   │ └─base::withCallingHandlers(...)
  5. │   └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
  6. ├─alabaster.base::.writeMetadata(info, dir = dir)
  7. │ └─alabaster.base::writeMetadata(...)
  8. │   └─jsonvalidate::json_validate(...)
  9. │     └─jsonvalidate::json_validator(...)
 10. │       └─jsonvalidate:::jsonvalidate_js()
 11. └─base::loadNamespace(x)
 12.   └─base::library.dynam(lib, package, package.lib)
 13.     └─base::dyn.load(file, DLLpath = DLLpath, ...)
── Failure ('test-stage-array.R:132:5'): stageObject works with DelayedArrays with preserved operations ──
`alabaster.base::.writeMetadata(info, dir = dir)` threw an error.
Message: unable to load shared object '/home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library/V8/libs/V8.so':
  libnode.so.72: cannot open shared object file: No such file or directory
Class:   simpleError/error/condition
Backtrace:
     ▆
  1. ├─testthat::expect_error(...) at test-stage-array.R:132:5
  2. │ └─testthat:::quasi_capture(...)
  3. │   ├─testthat (local) .capture(...)
  4. │   │ └─base::withCallingHandlers(...)
  5. │   └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
  6. ├─alabaster.base::.writeMetadata(info, dir = dir)
  7. │ └─alabaster.base::writeMetadata(...)
  8. │   └─jsonvalidate::json_validate(...)
  9. │     └─jsonvalidate::json_validator(...)
 10. │       └─jsonvalidate:::jsonvalidate_js()
 11. └─base::loadNamespace(x)
 12.   └─base::library.dynam(lib, package, package.lib)
 13.     └─base::dyn.load(file, DLLpath = DLLpath, ...)
── Error ('test-stage-array.R:144:5'): stageObject works with DelayedArrays with local references ──
Error in `dyn.load(file, DLLpath = DLLpath, ...)`: unable to load shared object '/home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library/V8/libs/V8.so':
  libnode.so.72: cannot open shared object file: No such file or directory
Backtrace:
    ▆
 1. ├─alabaster.base::.writeMetadata(info, dir = dir) at test-stage-array.R:144:5
 2. │ └─alabaster.base::writeMetadata(...)
 3. │   └─jsonvalidate::json_validate(...)
 4. │     └─jsonvalidate::json_validator(...)
 5. │       └─jsonvalidate:::jsonvalidate_js()
 6. └─base::loadNamespace(x)
 7.   └─base::library.dynam(lib, package, package.lib)
 8.     └─base::dyn.load(file, DLLpath = DLLpath, ...)
── Failure ('test-stage-array.R:202:9'): stageObject recycles existing HDF5Arrays ──
`alabaster.base::.writeMetadata(info, dir = dir)` threw an error.
Message: unable to load shared object '/home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library/V8/libs/V8.so':
  libnode.so.72: cannot open shared object file: No such file or directory
Class:   simpleError/error/condition
Backtrace:
     ▆
  1. ├─testthat::expect_error(...) at test-stage-array.R:202:9
  2. │ └─testthat:::quasi_capture(...)
  3. │   ├─testthat (local) .capture(...)
  4. │   │ └─base::withCallingHandlers(...)
  5. │   └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
  6. ├─alabaster.base::.writeMetadata(info, dir = dir)
  7. │ └─alabaster.base::writeMetadata(...)
  8. │   └─jsonvalidate::json_validate(...)
  9. │     └─jsonvalidate::json_validator(...)
 10. │       └─jsonvalidate:::jsonvalidate_js()
 11. └─base::loadNamespace(x)
 12.   └─base::library.dynam(lib, package, package.lib)
 13.     └─base::dyn.load(file, DLLpath = DLLpath, ...)
── Failure ('test-stage-array.R:222:9'): stageObject recycles existing HDF5Arrays ──
`alabaster.base::.writeMetadata(info, dir = dir)` threw an error.
Message: unable to load shared object '/home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library/V8/libs/V8.so':
  libnode.so.72: cannot open shared object file: No such file or directory
Class:   simpleError/error/condition
Backtrace:
     ▆
  1. ├─testthat::expect_error(...) at test-stage-array.R:222:9
  2. │ └─testthat:::quasi_capture(...)
  3. │   ├─testthat (local) .capture(...)
  4. │   │ └─base::withCallingHandlers(...)
  5. │   └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
  6. ├─alabaster.base::.writeMetadata(info, dir = dir)
  7. │ └─alabaster.base::writeMetadata(...)
  8. │   └─jsonvalidate::json_validate(...)
  9. │     └─jsonvalidate::json_validator(...)
 10. │       └─jsonvalidate:::jsonvalidate_js()
 11. └─base::loadNamespace(x)
 12.   └─base::library.dynam(lib, package, package.lib)
 13.     └─base::dyn.load(file, DLLpath = DLLpath, ...)
── Failure ('test-stage-matrix.R:21:5'): stageObject works as expected for the default method ──
`alabaster.base::.writeMetadata(info, dir)` threw an error.
Message: unable to load shared object '/home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library/V8/libs/V8.so':
  libnode.so.72: cannot open shared object file: No such file or directory
Class:   simpleError/error/condition
Backtrace:
     ▆
  1. ├─testthat::expect_error(...) at test-stage-matrix.R:21:5
  2. │ └─testthat:::quasi_capture(...)
  3. │   ├─testthat (local) .capture(...)
  4. │   │ └─base::withCallingHandlers(...)
  5. │   └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
  6. ├─alabaster.base::.writeMetadata(info, dir)
  7. │ └─alabaster.base::writeMetadata(...)
  8. │   └─jsonvalidate::json_validate(...)
  9. │     └─jsonvalidate::json_validator(...)
 10. │       └─jsonvalidate:::jsonvalidate_js()
 11. └─base::loadNamespace(x)
 12.   └─base::library.dynam(lib, package, package.lib)
 13.     └─base::dyn.load(file, DLLpath = DLLpath, ...)
── Failure ('test-stage-matrix.R:40:5'): stageObject works as expected without dimnames ──
`alabaster.base::.writeMetadata(info, dir)` threw an error.
Message: unable to load shared object '/home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library/V8/libs/V8.so':
  libnode.so.72: cannot open shared object file: No such file or directory
Class:   simpleError/error/condition
Backtrace:
     ▆
  1. ├─testthat::expect_error(...) at test-stage-matrix.R:40:5
  2. │ └─testthat:::quasi_capture(...)
  3. │   ├─testthat (local) .capture(...)
  4. │   │ └─base::withCallingHandlers(...)
  5. │   └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
  6. ├─alabaster.base::.writeMetadata(info, dir)
  7. │ └─alabaster.base::writeMetadata(...)
  8. │   └─jsonvalidate::json_validate(...)
  9. │     └─jsonvalidate::json_validator(...)
 10. │       └─jsonvalidate:::jsonvalidate_js()
 11. └─base::loadNamespace(x)
 12.   └─base::library.dynam(lib, package, package.lib)
 13.     └─base::dyn.load(file, DLLpath = DLLpath, ...)
── Failure ('test-stage-matrix.R:63:5'): stageObject works with sparse matrices ──
`alabaster.base::.writeMetadata(info, dir)` threw an error.
Message: unable to load shared object '/home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library/V8/libs/V8.so':
  libnode.so.72: cannot open shared object file: No such file or directory
Class:   simpleError/error/condition
Backtrace:
     ▆
  1. ├─testthat::expect_error(...) at test-stage-matrix.R:63:5
  2. │ └─testthat:::quasi_capture(...)
  3. │   ├─testthat (local) .capture(...)
  4. │   │ └─base::withCallingHandlers(...)
  5. │   └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
  6. ├─alabaster.base::.writeMetadata(info, dir)
  7. │ └─alabaster.base::writeMetadata(...)
  8. │   └─jsonvalidate::json_validate(...)
  9. │     └─jsonvalidate::json_validator(...)
 10. │       └─jsonvalidate:::jsonvalidate_js()
 11. └─base::loadNamespace(x)
 12.   └─base::library.dynam(lib, package, package.lib)
 13.     └─base::dyn.load(file, DLLpath = DLLpath, ...)
── Failure ('test-stage-matrix.R:79:5'): stageObject works with sparse matrices ──
`alabaster.base::.writeMetadata(info, dir)` threw an error.
Message: unable to load shared object '/home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library/V8/libs/V8.so':
  libnode.so.72: cannot open shared object file: No such file or directory
Class:   simpleError/error/condition
Backtrace:
     ▆
  1. ├─testthat::expect_error(...) at test-stage-matrix.R:79:5
  2. │ └─testthat:::quasi_capture(...)
  3. │   ├─testthat (local) .capture(...)
  4. │   │ └─base::withCallingHandlers(...)
  5. │   └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
  6. ├─alabaster.base::.writeMetadata(info, dir)
  7. │ └─alabaster.base::writeMetadata(...)
  8. │   └─jsonvalidate::json_validate(...)
  9. │     └─jsonvalidate::json_validator(...)
 10. │       └─jsonvalidate:::jsonvalidate_js()
 11. └─base::loadNamespace(x)
 12.   └─base::library.dynam(lib, package, package.lib)
 13.     └─base::dyn.load(file, DLLpath = DLLpath, ...)
── Failure ('test-stage-matrix.R:99:5'): stageObject works with character matrices and missing values ──
`alabaster.base::.writeMetadata(info, dir)` threw an error.
Message: unable to load shared object '/home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library/V8/libs/V8.so':
  libnode.so.72: cannot open shared object file: No such file or directory
Class:   simpleError/error/condition
Backtrace:
     ▆
  1. ├─testthat::expect_error(...) at test-stage-matrix.R:99:5
  2. │ └─testthat:::quasi_capture(...)
  3. │   ├─testthat (local) .capture(...)
  4. │   │ └─base::withCallingHandlers(...)
  5. │   └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
  6. ├─alabaster.base::.writeMetadata(info, dir)
  7. │ └─alabaster.base::writeMetadata(...)
  8. │   └─jsonvalidate::json_validate(...)
  9. │     └─jsonvalidate::json_validator(...)
 10. │       └─jsonvalidate:::jsonvalidate_js()
 11. └─base::loadNamespace(x)
 12.   └─base::library.dynam(lib, package, package.lib)
 13.     └─base::dyn.load(file, DLLpath = DLLpath, ...)
── Failure ('test-stage-matrix.R:144:5'): stageObject works with DelayedMatrices (naive) ──
`alabaster.base::.writeMetadata(info, dir)` threw an error.
Message: unable to load shared object '/home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library/V8/libs/V8.so':
  libnode.so.72: cannot open shared object file: No such file or directory
Class:   simpleError/error/condition
Backtrace:
     ▆
  1. ├─testthat::expect_error(...) at test-stage-matrix.R:144:5
  2. │ └─testthat:::quasi_capture(...)
  3. │   ├─testthat (local) .capture(...)
  4. │   │ └─base::withCallingHandlers(...)
  5. │   └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
  6. ├─alabaster.base::.writeMetadata(info, dir)
  7. │ └─alabaster.base::writeMetadata(...)
  8. │   └─jsonvalidate::json_validate(...)
  9. │     └─jsonvalidate::json_validator(...)
 10. │       └─jsonvalidate:::jsonvalidate_js()
 11. └─base::loadNamespace(x)
 12.   └─base::library.dynam(lib, package, package.lib)
 13.     └─base::dyn.load(file, DLLpath = DLLpath, ...)
── Failure ('test-stage-matrix.R:156:5'): stageObject works with DelayedMatrices (naive) ──
`alabaster.base::.writeMetadata(info, dir)` threw an error.
Message: unable to load shared object '/home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library/V8/libs/V8.so':
  libnode.so.72: cannot open shared object file: No such file or directory
Class:   simpleError/error/condition
Backtrace:
     ▆
  1. ├─testthat::expect_error(...) at test-stage-matrix.R:156:5
  2. │ └─testthat:::quasi_capture(...)
  3. │   ├─testthat (local) .capture(...)
  4. │   │ └─base::withCallingHandlers(...)
  5. │   └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
  6. ├─alabaster.base::.writeMetadata(info, dir)
  7. │ └─alabaster.base::writeMetadata(...)
  8. │   └─jsonvalidate::json_validate(...)
  9. │     └─jsonvalidate::json_validator(...)
 10. │       └─jsonvalidate:::jsonvalidate_js()
 11. └─base::loadNamespace(x)
 12.   └─base::library.dynam(lib, package, package.lib)
 13.     └─base::dyn.load(file, DLLpath = DLLpath, ...)

[ FAIL 14 | WARN 11 | SKIP 0 | PASS 753 ]
Error: Test failures
Execution halted