Gordon Smyth
| Snapshot Date: 2024-12-23 13:40 -0500 (Mon, 23 Dec 2024) |
| git_url: https://git.bioconductor.org/packages/affylmGUI |
| git_branch: devel |
| git_last_commit: cc3b06c |
| git_last_commit_date: 2024-10-29 09:22:47 -0500 (Tue, 29 Oct 2024) |
| Back to Multiple platform build/check report for BioC 3.21: simplified long |
|
This page was generated on 2024-12-24 11:46 -0500 (Tue, 24 Dec 2024).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 24.04.1 LTS) | x86_64 | R Under development (unstable) (2024-10-21 r87258) -- "Unsuffered Consequences" | 4754 |
| palomino7 | Windows Server 2022 Datacenter | x64 | R Under development (unstable) (2024-10-26 r87273 ucrt) -- "Unsuffered Consequences" | 4472 |
| lconway | macOS 12.7.1 Monterey | x86_64 | R Under development (unstable) (2024-11-20 r87352) -- "Unsuffered Consequences" | 4426 |
| kjohnson3 | macOS 13.7.1 Ventura | arm64 | R Under development (unstable) (2024-11-20 r87352) -- "Unsuffered Consequences" | 4381 |
| kunpeng2 | Linux (openEuler 22.03 LTS-SP1) | aarch64 | R Under development (unstable) (2024-11-24 r87369) -- "Unsuffered Consequences" | 4373 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 30/2274 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| affylmGUI 1.81.0 (landing page) Gordon Smyth
| nebbiolo1 | Linux (Ubuntu 24.04.1 LTS) / x86_64 | OK | OK | OK | | ||||||||
| palomino7 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | | ||||||||
| lconway | macOS 12.7.1 Monterey / x86_64 | OK | OK | OK | OK | | ||||||||
| kjohnson3 | macOS 13.7.1 Ventura / arm64 | OK | OK | OK | OK | | ||||||||
| kunpeng2 | Linux (openEuler 22.03 LTS-SP1) / aarch64 | OK | OK | OK | ||||||||||
|
To the developers/maintainers of the affylmGUI package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/affylmGUI.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. - See Martin Grigorov's blog post for how to debug Linux ARM64 related issues on a x86_64 host. |
| Package: affylmGUI |
| Version: 1.81.0 |
| Command: /home/biocbuild/R/R/bin/R CMD check --install=check:affylmGUI.install-out.txt --library=/home/biocbuild/R/R/site-library --no-vignettes --timings affylmGUI_1.81.0.tar.gz |
| StartedAt: 2024-12-24 03:35:37 -0000 (Tue, 24 Dec 2024) |
| EndedAt: 2024-12-24 03:37:47 -0000 (Tue, 24 Dec 2024) |
| EllapsedTime: 130.3 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: affylmGUI.Rcheck |
| Warnings: 0 |
##############################################################################
##############################################################################
###
### Running command:
###
### /home/biocbuild/R/R/bin/R CMD check --install=check:affylmGUI.install-out.txt --library=/home/biocbuild/R/R/site-library --no-vignettes --timings affylmGUI_1.81.0.tar.gz
###
##############################################################################
##############################################################################
* using log directory ‘/home/biocbuild/bbs-3.21-bioc/meat/affylmGUI.Rcheck’
* using R Under development (unstable) (2024-11-24 r87369)
* using platform: aarch64-unknown-linux-gnu
* R was compiled by
aarch64-unknown-linux-gnu-gcc (GCC) 14.2.0
GNU Fortran (GCC) 14.2.0
* running under: openEuler 24.03 (LTS)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘affylmGUI/DESCRIPTION’ ... OK
* this is package ‘affylmGUI’ version ‘1.81.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘affylmGUI’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking whether startup messages can be suppressed ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
ChooseCDF: no visible binding for global variable ‘.affylmGUIglobals’
ChooseCDF : onOK: no visible binding for global variable
‘.affylmGUIglobals’
ChooseCDF : onCancel: no visible binding for global variable
‘.affylmGUIglobals’
ChooseCDF : <anonymous>: no visible binding for global variable
‘.affylmGUIglobals’
ChooseContrastParameterization: no visible binding for global variable
‘affylmGUIenvironment’
ChooseContrastParameterization: no visible binding for global variable
‘.affylmGUIglobals’
ChooseContrastParameterization : onOK: no visible binding for global
variable ‘.affylmGUIglobals’
ChooseContrastParameterization : onCancel: no visible binding for
global variable ‘.affylmGUIglobals’
ChooseContrastParameterization : <anonymous>: no visible binding for
global variable ‘.affylmGUIglobals’
ChooseEbayesStatistic: no visible binding for global variable
‘.affylmGUIglobals’
ChooseEbayesStatistic : onOK: no visible binding for global variable
‘.affylmGUIglobals’
ChooseEbayesStatistic : onCancel: no visible binding for global
variable ‘.affylmGUIglobals’
ChooseEbayesStatistic : <anonymous>: no visible binding for global
variable ‘.affylmGUIglobals’
ComputeContrasts: no visible binding for global variable
‘affylmGUIenvironment’
ComputeLinearModelFit: no visible binding for global variable
‘affylmGUIenvironment’
ComputeLinearModelFit: no visible binding for global variable
‘.affylmGUIglobals’
DeleteContrastParameterization: no visible binding for global variable
‘affylmGUIenvironment’
DensityPlot: no visible binding for global variable
‘affylmGUIenvironment’
DensityPlot: no visible binding for global variable ‘.affylmGUIglobals’
DensityPlot : plotFunction: no visible binding for global variable
‘.affylmGUIglobals’
DensityPlotAll: no visible binding for global variable
‘affylmGUIenvironment’
DensityPlotAll: no visible binding for global variable
‘.affylmGUIglobals’
DensityPlotAll : plotFunction: no visible binding for global variable
‘.affylmGUIglobals’
DensityPlotAll : plotFunction: no visible binding for global variable
‘affylmGUIenvironment’
ExportHTMLreport: no visible binding for global variable
‘affylmGUIenvironment’
ExportNormalizedExpressionValues: no visible binding for global
variable ‘affylmGUIenvironment’
GetComponentsToExportInHTMLreport: no visible binding for global
variable ‘affylmGUIenvironment’
GetComponentsToExportInHTMLreport: no visible binding for global
variable ‘.affylmGUIglobals’
GetComponentsToExportInHTMLreport : onOK: no visible binding for global
variable ‘.affylmGUIglobals’
GetComponentsToExportInHTMLreport : onCancel: no visible binding for
global variable ‘.affylmGUIglobals’
GetComponentsToExportInHTMLreport : <anonymous>: no visible binding for
global variable ‘.affylmGUIglobals’
GetContrast: no visible binding for global variable ‘.affylmGUIglobals’
GetContrast: no visible binding for global variable
‘affylmGUIenvironment’
GetContrast : onOK: no visible binding for global variable
‘.affylmGUIglobals’
GetContrast : onCancel: no visible binding for global variable
‘.affylmGUIglobals’
GetContrast : <anonymous>: no visible binding for global variable
‘.affylmGUIglobals’
GetContrastNamesForHeatDiagram: no visible binding for global variable
‘.affylmGUIglobals’
GetContrastNamesForHeatDiagram : onOK: no visible binding for global
variable ‘.affylmGUIglobals’
GetContrastNamesForHeatDiagram : onCancel: no visible binding for
global variable ‘.affylmGUIglobals’
GetContrastNamesForHeatDiagram : <anonymous>: no visible binding for
global variable ‘.affylmGUIglobals’
GetContrastParameterizationName: no visible binding for global variable
‘.affylmGUIglobals’
GetContrastParameterizationName : onOK: no visible binding for global
variable ‘.affylmGUIglobals’
GetContrastParameterizationName : onCancel: no visible binding for
global variable ‘.affylmGUIglobals’
GetContrastParameterizationName : <anonymous>: no visible binding for
global variable ‘.affylmGUIglobals’
GetContrasts: no visible binding for global variable
‘affylmGUIenvironment’
GetDEcutoff: no visible binding for global variable ‘.affylmGUIglobals’
GetDEcutoff : onOK: no visible binding for global variable
‘.affylmGUIglobals’
GetDEcutoff : onCancel: no visible binding for global variable
‘.affylmGUIglobals’
GetDEcutoff : <anonymous>: no visible binding for global variable
‘.affylmGUIglobals’
GetGeneLabelsOptions: no visible binding for global variable
‘.affylmGUIglobals’
GetGeneLabelsOptions : onOK: no visible binding for global variable
‘.affylmGUIglobals’
GetGeneLabelsOptions : onCancel: no visible binding for global variable
‘.affylmGUIglobals’
GetGeneLabelsOptions : <anonymous>: no visible binding for global
variable ‘.affylmGUIglobals’
GetJpegOrPngParams: no visible binding for global variable
‘.affylmGUIglobals’
GetJpegOrPngParams : onOK: no visible binding for global variable
‘.affylmGUIglobals’
GetJpegOrPngParams : onCancel: no visible binding for global variable
‘.affylmGUIglobals’
GetJpegOrPngParams : <anonymous>: no visible binding for global
variable ‘.affylmGUIglobals’
GetJpegOrPngX11Params: no visible binding for global variable
‘.affylmGUIglobals’
GetJpegOrPngX11Params : onOK: no visible binding for global variable
‘.affylmGUIglobals’
GetJpegOrPngX11Params : onCancel: no visible binding for global
variable ‘.affylmGUIglobals’
GetJpegOrPngX11Params : <anonymous>: no visible binding for global
variable ‘.affylmGUIglobals’
GetLogPLMDataChoice: no visible binding for global variable
‘.affylmGUIglobals’
GetLogPLMDataChoice : onCancel: no visible binding for global variable
‘.affylmGUIglobals’
GetLogPLMDataChoice : onOK: no visible binding for global variable
‘.affylmGUIglobals’
GetLogPLMDataChoice : <anonymous>: no visible binding for global
variable ‘.affylmGUIglobals’
GetMultipleContrasts: no visible binding for global variable
‘.affylmGUIglobals’
GetMultipleContrasts: no visible binding for global variable
‘affylmGUIenvironment’
GetMultipleContrasts : onOK: no visible binding for global variable
‘.affylmGUIglobals’
GetMultipleContrasts : onCancel: no visible binding for global variable
‘.affylmGUIglobals’
GetMultipleContrasts : <anonymous>: no visible binding for global
variable ‘.affylmGUIglobals’
GetNormalizationMethod: no visible binding for global variable
‘.affylmGUIglobals’
GetNormalizationMethod : onCancel: no visible binding for global
variable ‘.affylmGUIglobals’
GetNormalizationMethod : onOK: no visible binding for global variable
‘.affylmGUIglobals’
GetNormalizationMethod : <anonymous>: no visible binding for global
variable ‘.affylmGUIglobals’
GetPValueCutoff: no visible binding for global variable
‘.affylmGUIglobals’
GetPValueCutoff : onOK: no visible binding for global variable
‘.affylmGUIglobals’
GetPValueCutoff : onCancel: no visible binding for global variable
‘.affylmGUIglobals’
GetPValueCutoff : <anonymous>: no visible binding for global variable
‘.affylmGUIglobals’
GetParameterizationName: no visible binding for global variable
‘.affylmGUIglobals’
GetParameterizationName : onOK: no visible binding for global variable
‘.affylmGUIglobals’
GetParameterizationName : onCancel: no visible binding for global
variable ‘.affylmGUIglobals’
GetParameterizationName : <anonymous>: no visible binding for global
variable ‘.affylmGUIglobals’
GetPlotLabels: no visible binding for global variable
‘.affylmGUIglobals’
GetPlotLabels : onOK: no visible binding for global variable
‘.affylmGUIglobals’
GetPlotLabels : onCancel: no visible binding for global variable
‘.affylmGUIglobals’
GetPlotLabels : <anonymous>: no visible binding for global variable
‘.affylmGUIglobals’
GetPlotSize: no visible binding for global variable ‘.affylmGUIglobals’
GetPlotSize : onOK: no visible binding for global variable
‘.affylmGUIglobals’
GetPlotSize : onCancel: no visible binding for global variable
‘.affylmGUIglobals’
GetPlotSize : <anonymous>: no visible binding for global variable
‘.affylmGUIglobals’
GetPlotTitle: no visible binding for global variable
‘.affylmGUIglobals’
GetPlotTitle : onOK: no visible binding for global variable
‘.affylmGUIglobals’
GetPlotTitle : onCancel: no visible binding for global variable
‘.affylmGUIglobals’
GetPlotTitle : <anonymous>: no visible binding for global variable
‘.affylmGUIglobals’
GetResidualTypeChoice: no visible binding for global variable
‘.affylmGUIglobals’
GetResidualTypeChoice : onCancel: no visible binding for global
variable ‘.affylmGUIglobals’
GetResidualTypeChoice : onOK: no visible binding for global variable
‘.affylmGUIglobals’
GetResidualTypeChoice : <anonymous>: no visible binding for global
variable ‘.affylmGUIglobals’
GetSetNames: no visible binding for global variable ‘.affylmGUIglobals’
GetSetNames : onOK: no visible binding for global variable
‘.affylmGUIglobals’
GetSetNames : onCancel: no visible binding for global variable
‘.affylmGUIglobals’
GetSetNames : <anonymous>: no visible binding for global variable
‘.affylmGUIglobals’
GetSlideNum: no visible binding for global variable
‘affylmGUIenvironment’
GetSlideNum: no visible binding for global variable ‘.affylmGUIglobals’
GetSlideNum : onOK: no visible binding for global variable
‘.affylmGUIglobals’
GetSlideNum : onCancel: no visible binding for global variable
‘.affylmGUIglobals’
GetSlideNum : <anonymous>: no visible binding for global variable
‘.affylmGUIglobals’
GetSlideNums: no visible binding for global variable
‘affylmGUIenvironment’
GetSlideNums: no visible binding for global variable
‘.affylmGUIglobals’
GetSlideNums : onOK: no visible binding for global variable
‘.affylmGUIglobals’
GetSlideNums : onCancel: no visible binding for global variable
‘.affylmGUIglobals’
GetSlideNums : <anonymous>: no visible binding for global variable
‘.affylmGUIglobals’
GetWhichProbes: no visible binding for global variable
‘.affylmGUIglobals’
GetWhichProbes : onCancel: no visible binding for global variable
‘.affylmGUIglobals’
GetWhichProbes : onOK: no visible binding for global variable
‘.affylmGUIglobals’
GetWhichProbes : <anonymous>: no visible binding for global variable
‘.affylmGUIglobals’
GetWtAreaParams: no visible binding for global variable
‘.affylmGUIglobals’
GetWtAreaParams : onOK: no visible binding for global variable
‘affylmGUIenvironment’
GetWtAreaParams : onOK: no visible binding for global variable
‘.affylmGUIglobals’
GetWtAreaParams : onCancel: no visible binding for global variable
‘.affylmGUIglobals’
GetWtAreaParams : <anonymous>: no visible binding for global variable
‘.affylmGUIglobals’
GetWtFlagParams: no visible binding for global variable
‘.affylmGUIglobals’
GetWtFlagParams : onOK: no visible binding for global variable
‘.affylmGUIglobals’
GetWtFlagParams : onCancel: no visible binding for global variable
‘.affylmGUIglobals’
GetWtFlagParams : <anonymous>: no visible binding for global variable
‘.affylmGUIglobals’
GetWtFlagParams: no visible binding for global variable
‘affylmGUIenvironment’
GetlimmaDataSetName: no visible binding for global variable
‘affylmGUIenvironment’
GetlimmaDataSetName: no visible binding for global variable
‘.affylmGUIglobals’
GetlimmaDataSetName : onOK: no visible binding for global variable
‘affylmGUIenvironment’
GetlimmaDataSetName : <anonymous>: no visible binding for global
variable ‘.affylmGUIglobals’
HeatDiagramDialog: no visible binding for global variable
‘.affylmGUIglobals’
HeatDiagramDialog : onOK: no visible binding for global variable
‘.affylmGUIglobals’
HeatDiagramDialog : onCancel: no visible binding for global variable
‘.affylmGUIglobals’
HeatDiagramDialog : <anonymous>: no visible binding for global variable
‘.affylmGUIglobals’
HeatDiagramPlot: no visible binding for global variable
‘affylmGUIenvironment’
ImageArrayPlot: no visible binding for global variable
‘affylmGUIenvironment’
ImageArrayPlot: no visible binding for global variable
‘.affylmGUIglobals’
ImageArrayPlot : plotFunction: no visible binding for global variable
‘.affylmGUIglobals’
ImageQualityResidualPlot: no visible binding for global variable
‘affylmGUIenvironment’
ImageQualityResidualPlot: no visible binding for global variable
‘.affylmGUIglobals’
ImageQualityResidualPlot : plotFunction: no visible binding for global
variable ‘.affylmGUIglobals’
ImageQualityWeightPlot: no visible binding for global variable
‘affylmGUIenvironment’
ImageQualityWeightPlot: no visible binding for global variable
‘.affylmGUIglobals’
ImageQualityWeightPlot : plotFunction: no visible binding for global
variable ‘.affylmGUIglobals’
IntensityHistogram: no visible binding for global variable
‘affylmGUIenvironment’
IntensityHistogram: no visible binding for global variable
‘.affylmGUIglobals’
IntensityHistogram : plotFunction: no visible binding for global
variable ‘.affylmGUIglobals’
IntensityHistogramAll: no visible binding for global variable
‘affylmGUIenvironment’
IntensityHistogramAll: no visible binding for global variable
‘.affylmGUIglobals’
IntensityHistogramAll : plotFunction: no visible binding for global
variable ‘.affylmGUIglobals’
LogOddsPlot: no visible binding for global variable
‘affylmGUIenvironment’
NUSEPlotAll: no visible binding for global variable
‘affylmGUIenvironment’
NUSEPlotAll: no visible binding for global variable ‘.affylmGUIglobals’
NUSEPlotAll : plotFunction: no visible binding for global variable
‘.affylmGUIglobals’
NewLimmaFile: no visible binding for global variable
‘affylmGUIenvironment’
NormalizeNow: no visible binding for global variable
‘affylmGUIenvironment’
NormalizeNow: no visible binding for global variable
‘.affylmGUIglobals’
NormalizedIntensityBoxPlot: no visible binding for global variable
‘affylmGUIenvironment’
NormalizedIntensityBoxPlot: no visible binding for global variable
‘.affylmGUIglobals’
NormalizedIntensityBoxPlot : plotFunction: no visible binding for
global variable ‘.affylmGUIglobals’
OpenALimmaFile: no visible binding for global variable
‘affylmGUIenvironment’
OpenCDFFile: no visible binding for global variable
‘affylmGUIenvironment’
OpenCDFandTargetsfiles : onOK: no visible binding for global variable
‘affylmGUIenvironment’
OpenCDFandTargetsfiles: no visible binding for global variable
‘affylmGUIenvironment’
OpenTargetsFile: no visible binding for global variable
‘affylmGUIenvironment’
PlotOptions: no visible binding for global variable ‘.affylmGUIglobals’
PlotOptions : onOK: no visible binding for global variable
‘.affylmGUIglobals’
PlotOptions : <anonymous>: no visible binding for global variable
‘.affylmGUIglobals’
QQTplot: no visible binding for global variable ‘affylmGUIenvironment’
RLEPlotAll: no visible binding for global variable
‘affylmGUIenvironment’
RLEPlotAll: no visible binding for global variable ‘.affylmGUIglobals’
RLEPlotAll : plotFunction: no visible binding for global variable
‘.affylmGUIglobals’
RNADegradationPlotAll: no visible binding for global variable
‘affylmGUIenvironment’
RNADegradationPlotAll: no visible binding for global variable
‘.affylmGUIglobals’
RNADegradationPlotAll : plotFunction: no visible binding for global
variable ‘.affylmGUIglobals’
RawIntensityBoxPlot: no visible binding for global variable
‘affylmGUIenvironment’
RawIntensityBoxPlot: no visible binding for global variable
‘.affylmGUIglobals’
RawIntensityBoxPlot : plotFunction: no visible binding for global
variable ‘.affylmGUIglobals’
Resize: no visible binding for '<<-' assignment to ‘LocalHScale’
Resize: no visible binding for '<<-' assignment to ‘LocalVScale’
Resize: no visible binding for global variable ‘LocalHScale’
Resize: no visible binding for global variable ‘LocalVScale’
SaveAsLimmaFile: no visible binding for global variable
‘affylmGUIenvironment’
SaveAsLimmaFile: no visible binding for global variable
‘.affylmGUIglobals’
SaveLimmaFile: no visible binding for global variable
‘affylmGUIenvironment’
SaveLimmaFile: no visible binding for global variable
‘.affylmGUIglobals’
SetWD: no visible binding for global variable ‘.affylmGUIglobals’
TclRequire: no visible binding for global variable ‘.affylmGUIglobals’
TclRequire : onDestroy: no visible binding for global variable
‘.affylmGUIglobals’
TclRequire : onOK: no visible binding for global variable
‘.affylmGUIglobals’
TclRequire : onOK: no visible binding for global variable
‘affylmGUIenvironment’
UpDownOrBoth: no visible binding for global variable
‘.affylmGUIglobals’
UpDownOrBoth : onOK: no visible binding for global variable
‘.affylmGUIglobals’
UpDownOrBoth : <anonymous>: no visible binding for global variable
‘.affylmGUIglobals’
VennDiagramPlot: no visible binding for global variable
‘affylmGUIenvironment’
ViewContrastsMatrixAsPairs: no visible binding for global variable
‘affylmGUIenvironment’
ViewContrastsMatrixInTable: no visible binding for global variable
‘affylmGUIenvironment’
ViewExistingContrastParameterization: no visible binding for global
variable ‘affylmGUIenvironment’
ViewRNATargets: no visible binding for global variable
‘affylmGUIenvironment’
ViewRNATargets: no visible binding for global variable
‘.affylmGUIglobals’
ViewRNATargets : onClose: no visible binding for global variable
‘.affylmGUIglobals’
ViewRNATargets : <anonymous>: no visible binding for global variable
‘.affylmGUIglobals’
affyPlotMA: no visible binding for global variable
‘affylmGUIenvironment’
affyPlotMA: no visible binding for global variable ‘.affylmGUIglobals’
affyPlotMA : plotFunction: no visible binding for global variable
‘.affylmGUIglobals’
affyPlotMAcontrast: no visible binding for global variable
‘affylmGUIenvironment’
affylmGUI: no visible binding for global variable
‘affylmGUIenvironment’
affylmGUI: no visible binding for global variable ‘.affylmGUIglobals’
affylmGUI : <anonymous>: no visible binding for global variable
‘.affylmGUIglobals’
chooseDir: no visible binding for global variable ‘.affylmGUIglobals’
evalRcode: no visible binding for global variable ‘.affylmGUIglobals’
evalRcode : runOverall: no visible binding for global variable
‘.affylmGUIglobals’
evalRcode : runOverall: no visible binding for global variable
‘affylmGUIenvironment’
generalPlotFunction: no visible binding for global variable
‘.affylmGUIglobals’
generalPlotFunction: no visible binding for global variable
‘affylmGUIenvironment’
initGlobals: no visible binding for global variable
‘affylmGUIenvironment’
onDestroy: no visible binding for global variable
‘affylmGUIenvironment’
onExit: no visible binding for global variable ‘affylmGUIenvironment’
onExit: no visible binding for global variable ‘.affylmGUIglobals’
showTopTable: no visible binding for global variable
‘affylmGUIenvironment’
showTopTable : onOK: no visible binding for global variable
‘affylmGUIenvironment’
Undefined global functions or variables:
.affylmGUIglobals LocalHScale LocalVScale affylmGUIenvironment
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... NOTE
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
affylmGU-package.Rd: limma-package
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: 2 NOTEs
See
‘/home/biocbuild/bbs-3.21-bioc/meat/affylmGUI.Rcheck/00check.log’
for details.
affylmGUI.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/R/R/bin/R CMD INSTALL affylmGUI ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library’ * installing *source* package ‘affylmGUI’ ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (affylmGUI)
affylmGUI.Rcheck/affylmGUI-Ex.timings
| name | user | system | elapsed | |
| affylmGU-package | 0.012 | 0.000 | 0.013 | |