Ben Bolstad
| Snapshot Date: 2026-03-09 13:40 -0400 (Mon, 09 Mar 2026) |
| git_url: https://git.bioconductor.org/packages/affyio |
| git_branch: devel |
| git_last_commit: 51aea4e |
| git_last_commit_date: 2025-10-29 09:42:03 -0400 (Wed, 29 Oct 2025) |
| Back to Multiple platform build/check report for BioC 3.23: simplified long |
|
This page was generated on 2026-03-10 11:33 -0400 (Tue, 10 Mar 2026).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 24.04.3 LTS) | x86_64 | R Under development (unstable) (2026-03-05 r89546) -- "Unsuffered Consequences" | 4522 |
| kjohnson3 | macOS 13.7.7 Ventura | arm64 | R Under development (unstable) (2026-03-01 r89506) -- "Unsuffered Consequences" | 2847 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 30/2360 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| affyio 1.81.0 (landing page) Ben Bolstad
| nebbiolo1 | Linux (Ubuntu 24.04.3 LTS) / x86_64 | OK | OK | WARNINGS | | ||||||||
| kjohnson3 | macOS 13.7.7 Ventura / arm64 | ERROR | OK | ERROR | ERROR | |||||||||
| See other builds for affyio in R Universe. | ||||||||||||||
|
To the developers/maintainers of the affyio package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/affyio.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: affyio |
| Version: 1.81.0 |
| Command: /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:affyio.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings affyio_1.81.0.tar.gz |
| StartedAt: 2026-03-09 16:09:39 -0400 (Mon, 09 Mar 2026) |
| EndedAt: 2026-03-09 16:09:43 -0400 (Mon, 09 Mar 2026) |
| EllapsedTime: 4.2 seconds |
| RetCode: 1 |
| Status: ERROR |
| CheckDir: affyio.Rcheck |
| Warnings: NA |
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### Running command:
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### /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:affyio.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings affyio_1.81.0.tar.gz
###
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* using log directory ‘/Users/biocbuild/bbs-3.23-bioc/meat/affyio.Rcheck’
* using R Under development (unstable) (2026-03-01 r89506)
* using platform: aarch64-apple-darwin23
* R was compiled by
Apple clang version 17.0.0 (clang-1700.3.19.1)
GNU Fortran (GCC) 14.2.0
* running under: macOS Sonoma 14.8.3
* using session charset: UTF-8
* current time: 2026-03-09 20:09:40 UTC
* using option ‘--no-vignettes’
* checking for file ‘affyio/DESCRIPTION’ ... OK
* this is package ‘affyio’ version ‘1.81.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘affyio’ can be installed ... ERROR
Installation failed.
See ‘/Users/biocbuild/bbs-3.23-bioc/meat/affyio.Rcheck/00install.out’ for details.
* DONE
Status: 1 ERROR
See
‘/Users/biocbuild/bbs-3.23-bioc/meat/affyio.Rcheck/00check.log’
for details.
affyio.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL affyio ### ############################################################################## ############################################################################## * installing to library ‘/Library/Frameworks/R.framework/Versions/4.6/Resources/library’ * installing *source* package ‘affyio’ ... ** this is package ‘affyio’ version ‘1.81.0’ ** using staged installation checking for gcc... clang -arch arm64 -std=gnu23 checking whether the C compiler works... no configure: error: in `/Users/biocbuild/bbs-3.23-bioc/meat/affyio': configure: error: C compiler cannot create executables See `config.log' for more details ERROR: configuration failed for package ‘affyio’ * removing ‘/Library/Frameworks/R.framework/Versions/4.6/Resources/library/affyio’