| Back to Multiple platform build/check report for BioC 3.24: simplified long |
|
This page was generated on 2026-05-06 11:34 -0400 (Wed, 06 May 2026).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 24.04.4 LTS) | x86_64 | 4.6.0 RC (2026-04-17 r89917) -- "Because it was There" | 4878 |
| taishan | Linux (openEuler 24.03 LTS) | aarch64 | 4.5.0 (2025-04-11) -- "How About a Twenty-Six" | 4663 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 2/2366 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| a4Base 1.61.0 (landing page) Laure Cougnaud
| nebbiolo2 | Linux (Ubuntu 24.04.4 LTS) / x86_64 | ERROR | OK | ERROR | |||||||||
| taishan | Linux (openEuler 24.03 LTS) / aarch64 | ERROR | OK | ERROR | ||||||||||
| See other builds for a4Base in R Universe. | ||||||||||||||
|
To the developers/maintainers of the a4Base package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/a4Base.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. - See Martin Grigorov's blog post for how to debug Linux ARM64 related issues on a x86_64 host. |
| Package: a4Base |
| Version: 1.61.0 |
| Command: /home/biocbuild/R/R/bin/R CMD check --install=check:a4Base.install-out.txt --library=/home/biocbuild/R/R/site-library --no-vignettes --timings a4Base_1.61.0.tar.gz |
| StartedAt: 2026-05-05 07:07:47 -0000 (Tue, 05 May 2026) |
| EndedAt: 2026-05-05 07:08:09 -0000 (Tue, 05 May 2026) |
| EllapsedTime: 22.0 seconds |
| RetCode: 1 |
| Status: ERROR |
| CheckDir: a4Base.Rcheck |
| Warnings: NA |
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### Running command:
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### /home/biocbuild/R/R/bin/R CMD check --install=check:a4Base.install-out.txt --library=/home/biocbuild/R/R/site-library --no-vignettes --timings a4Base_1.61.0.tar.gz
###
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* using log directory ‘/home/biocbuild/bbs-3.24-bioc/meat/a4Base.Rcheck’
* using R version 4.5.0 (2025-04-11)
* using platform: aarch64-unknown-linux-gnu
* R was compiled by
aarch64-unknown-linux-gnu-gcc (GCC) 14.2.0
GNU Fortran (GCC) 14.2.0
* running under: openEuler 24.03 (LTS)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘a4Base/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘a4Base’ version ‘1.61.0’
* checking package namespace information ... OK
* checking package dependencies ... INFO
Package which this enhances but not available for checking: ‘JavaGD’
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘a4Base’ can be installed ... ERROR
Installation failed.
See ‘/home/biocbuild/bbs-3.24-bioc/meat/a4Base.Rcheck/00install.out’ for details.
* DONE
Status: 1 ERROR
See
‘/home/biocbuild/bbs-3.24-bioc/meat/a4Base.Rcheck/00check.log’
for details.
a4Base.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/R/R/bin/R CMD INSTALL a4Base ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/R/R-4.5.0/site-library’ * installing *source* package ‘a4Base’ ... ** this is package ‘a4Base’ version ‘1.61.0’ ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading Error: object ‘topTableF’ is not exported by 'namespace:limma' Execution halted ERROR: lazy loading failed for package ‘a4Base’ * removing ‘/home/biocbuild/R/R-4.5.0/site-library/a4Base’ * restoring previous ‘/home/biocbuild/R/R-4.5.0/site-library/a4Base’