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### Running command:
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###   /home/biocbuild/bbs-3.21-bioc/R/bin/R CMD INSTALL XDE
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* installing to library ‘/home/biocbuild/bbs-3.21-bioc/R/site-library’
* installing *source* package ‘XDE’ ...
** using staged installation
** libs
using C compiler: ‘gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0’
using C++ compiler: ‘g++ (Ubuntu 13.2.0-23ubuntu4) 13.2.0’
g++ -std=gnu++17 -I"/home/biocbuild/bbs-3.21-bioc/R/include" -DNDEBUG   -I/usr/local/include  -DSTRICT_R_HEADERS=1  -fpic  -g -O2  -Wall -DR_NO_REMAP -c Cholesky.cpp -o Cholesky.o
g++ -std=gnu++17 -I"/home/biocbuild/bbs-3.21-bioc/R/include" -DNDEBUG   -I/usr/local/include  -DSTRICT_R_HEADERS=1  -fpic  -g -O2  -Wall -DR_NO_REMAP -c Matrix_v2.cpp -o Matrix_v2.o
Matrix_v2.cpp: In function ‘void matrixMult(const std::vector<std::vector<double> >&, const std::vector<double>&, std::vector<double>&)’:
Matrix_v2.cpp:244:7: warning: unused variable ‘k’ [-Wunused-variable]
  244 |   int k = 1;
      |       ^
Matrix_v2.cpp:246:9: warning: unused variable ‘j’ [-Wunused-variable]
  246 |   int i,j,r;
      |         ^
g++ -std=gnu++17 -I"/home/biocbuild/bbs-3.21-bioc/R/include" -DNDEBUG   -I/usr/local/include  -DSTRICT_R_HEADERS=1  -fpic  -g -O2  -Wall -DR_NO_REMAP -c Potential_v2.cpp -o Potential_v2.o
Potential_v2.cpp: In function ‘double potentialDDeltaStar_HyperInverseWishart(int, const double*, const double*, const double*, const double*, const double*, int, int, const std::vector<std::vector<std::vector<double> > >&, const std::vector<int>&, const std::vector<std::vector<int> >&)’:
Potential_v2.cpp:308:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::vector<std::vector<double> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  308 |   for (k = 0; k < UBlocks.size(); k++) {
      |               ~~^~~~~~~~~~~~~~~~
Potential_v2.cpp:310:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::vector<double> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  310 |     for (i = 0; i < UBlocks[k].size(); i++)
      |                 ~~^~~~~~~~~~~~~~~~~~~
Potential_v2.cpp:316:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::vector<int> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  316 |   for (k = 0; k < theGene.size(); k++)
      |               ~~^~~~~~~~~~~~~~~~
Potential_v2.cpp:321:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::vector<double> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  321 |   for (i = 0; i < Omega[0].size(); i++)
      |               ~~^~~~~~~~~~~~~~~~~
Potential_v2.cpp:322:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  322 |     for (j = 0; j < UU[first].size(); j++) {
      |                 ~~^~~~~~~~~~~~~~~~~~
Potential_v2.cpp:328:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::vector<std::vector<double> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  328 |   for (k = 1; k < Omega.size(); k++) {
      |               ~~^~~~~~~~~~~~~~
Potential_v2.cpp:329:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<int>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  329 |     for (i = 0; i < oldComponents[k].size(); i++)
      |                 ~~^~~~~~~~~~~~~~~~~~~~~~~~~
Potential_v2.cpp:330:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  330 |       for (j = 0; j < UU[first].size(); j++) {
      |                   ~~^~~~~~~~~~~~~~~~~~
Potential_v2.cpp:335:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::vector<double> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  335 |     for (i = 0; i < Omega[k].size() - oldComponents[k].size(); i++)
      |                 ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Potential_v2.cpp:336:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  336 |       for (j = 0; j < UU[first].size(); j++) {
      |                   ~~^~~~~~~~~~~~~~~~~~
Potential_v2.cpp:345:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::vector<std::vector<double> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  345 |   for (k = 0; k < Omega.size(); k++) {
      |               ~~^~~~~~~~~~~~~~
Potential_v2.cpp:347:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<int>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  347 |     for (i = 0; i < theGene[k].size(); i++)
      |                 ~~^~~~~~~~~~~~~~~~~~~
Potential_v2.cpp:356:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::vector<std::vector<double> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  356 |   for (k = 1; k < Omega.size(); k++)
      |               ~~^~~~~~~~~~~~~~
Potential_v2.cpp:364:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::vector<double> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  364 |       for (i = 0; i < OmegaSub.size(); i++) {
      |                   ~~^~~~~~~~~~~~~~~~~
Potential_v2.cpp:366:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  366 |         for (j = 0; j < OmegaSub[i].size(); j++)
      |                     ~~^~~~~~~~~~~~~~~~~~~~
Potential_v2.cpp:369:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::vector<double> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  369 |       for (i = 0; i < USub.size(); i++) {
      |                   ~~^~~~~~~~~~~~~
Potential_v2.cpp:371:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  371 |         for (j = 0; j < USub[i].size(); j++)
      |                     ~~^~~~~~~~~~~~~~~~
Potential_v2.cpp:374:41: warning: statement has no effect [-Wunused-value]
  374 |         if (theGene[k][i] == 1) include == 1;
      |                                 ~~~~~~~~^~~~
g++ -std=gnu++17 -I"/home/biocbuild/bbs-3.21-bioc/R/include" -DNDEBUG   -I/usr/local/include  -DSTRICT_R_HEADERS=1  -fpic  -g -O2  -Wall -DR_NO_REMAP -c Random_v2.cpp -o Random_v2.o
Random_v2.cpp: In member function ‘int Random::Discrete(const std::vector<double>&)’:
Random_v2.cpp:159:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  159 |   for (i = 0; i < prob.size(); i++)
      |               ~~^~~~~~~~~~~~~
Random_v2.cpp: In member function ‘std::vector<std::vector<double> > Random::CorrelationStandardInverseWishartAlternativeParam(int, double)’:
Random_v2.cpp:512:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::vector<double> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  512 |   for (i = 0; i < w.size(); i++)
      |               ~~^~~~~~~~~~
Random_v2.cpp:515:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  515 |       for (j = 0; j < w[i].size(); j++)
      |                   ~~^~~~~~~~~~~~~
Random_v2.cpp: In member function ‘std::vector<std::vector<std::vector<double> > > Random::HyperInverseWishart(double, const std::vector<std::vector<std::vector<double> > >&, const std::vector<int>&, const std::vector<std::vector<int> >&)’:
Random_v2.cpp:548:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::vector<std::vector<double> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  548 |   for (k = 0; k < D.size(); k++) {
      |               ~~^~~~~~~~~~
Random_v2.cpp:551:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::vector<double> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  551 |     for (i = 0; i < Sigma[k].size(); i++)
      |                 ~~^~~~~~~~~~~~~~~~~
Random_v2.cpp:557:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::vector<double> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  557 |   for (i = 0; i < temp.size(); i++)
      |               ~~^~~~~~~~~~~~~
Random_v2.cpp:558:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  558 |     for (j = 0; j < temp[i].size(); j++)
      |                 ~~^~~~~~~~~~~~~~~~
Random_v2.cpp:571:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::vector<std::vector<double> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  571 |   for (k = 1; k < D.size(); k++) {
      |               ~~^~~~~~~~~~
Random_v2.cpp:585:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::vector<double> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  585 |       for (i = 0; i < DRR.size(); i++) DRR[i].resize(DRR.size());
      |                   ~~^~~~~~~~~~~~
Random_v2.cpp:586:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::vector<double> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  586 |       for (i = 0; i < DSS.size(); i++) DSS[i].resize(DSS.size());
      |                   ~~^~~~~~~~~~~~
Random_v2.cpp:587:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::vector<double> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  587 |       for (i = 0; i < DRS.size(); i++) DRS[i].resize(DSS.size());
      |                   ~~^~~~~~~~~~~~
Random_v2.cpp:588:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::vector<double> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  588 |       for (i = 0; i < DSR.size(); i++) DSR[i].resize(DRR.size());
      |                   ~~^~~~~~~~~~~~
Random_v2.cpp:590:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::vector<double> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  590 |       for (i = 0; i < DSS.size(); i++)
      |                   ~~^~~~~~~~~~~~
Random_v2.cpp:591:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  591 |         for (j = 0; j < DSS[i].size(); j++)
      |                     ~~^~~~~~~~~~~~~~~
Random_v2.cpp:594:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::vector<double> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  594 |       for (i = 0; i < DRR.size(); i++)
      |                   ~~^~~~~~~~~~~~
Random_v2.cpp:595:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  595 |         for (j = 0; j < DRR[i].size(); j++)
      |                     ~~^~~~~~~~~~~~~~~
Random_v2.cpp:598:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::vector<double> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  598 |       for (i = 0; i < DSR.size(); i++)
      |                   ~~^~~~~~~~~~~~
Random_v2.cpp:599:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  599 |         for (j = 0; j < DSR[i].size(); j++) {
      |                     ~~^~~~~~~~~~~~~~~
Random_v2.cpp:608:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::vector<double> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  608 |       for (i = 0; i < SigmaSS.size(); i++) {
      |                   ~~^~~~~~~~~~~~~~~~
Random_v2.cpp:610:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  610 |         for (j = 0; j < SigmaSS[i].size(); j++)
      |                     ~~^~~~~~~~~~~~~~~~~~~
Random_v2.cpp:625:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::vector<double> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  625 |       for (i = 0; i < DRR.size(); i++) {
      |                   ~~^~~~~~~~~~~~
Random_v2.cpp:627:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  627 |         for (j = 0; j < DRR[i].size(); j++)
      |                     ~~^~~~~~~~~~~~~~~
Random_v2.cpp:675:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::vector<double> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  675 |       for (i = 0; i < LDSSInverseT.size(); i++) {
      |                   ~~^~~~~~~~~~~~~~~~~~~~~
Random_v2.cpp:677:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  677 |         for (j = 0; j < LDSSInverseT[i].size(); j++)
      |                     ~~^~~~~~~~~~~~~~~~~~~~~~~~
Random_v2.cpp:693:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::vector<double> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  693 |       for (i = 0; i < DRR.size(); i++) {
      |                   ~~^~~~~~~~~~~~
Random_v2.cpp:695:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::vector<double> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  695 |         for (j = 0; j < DSS.size(); j++)
      |                     ~~^~~~~~~~~~~~
Random_v2.cpp:705:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::vector<double> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  705 |       for (i = 0; i < mean.size(); i++)
      |                   ~~^~~~~~~~~~~~~
Random_v2.cpp:706:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  706 |         for (j = 0; j < mean[i].size(); j++)
      |                     ~~^~~~~~~~~~~~~~~~
Random_v2.cpp:726:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::vector<double> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  726 |       for (i = 0; i < SigmaSR.size(); i++) {
      |                   ~~^~~~~~~~~~~~~~~~
Random_v2.cpp:728:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  728 |         for (j = 0; j < SigmaSR[i].size(); j++)
      |                     ~~^~~~~~~~~~~~~~~~~~~
Random_v2.cpp:740:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::vector<double> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  740 |       for (i = 0; i < SigmaRGivenS.size(); i++)
      |                   ~~^~~~~~~~~~~~~~~~~~~~~
Random_v2.cpp:741:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  741 |         for (j = 0; j < SigmaRGivenS[i].size(); j++)
      |                     ~~^~~~~~~~~~~~~~~~~~~~~~~~
Random_v2.cpp:746:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::vector<double> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  746 |       for (i = 0; i < SigmaSS.size(); i++)
      |                   ~~^~~~~~~~~~~~~~~~
Random_v2.cpp:747:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  747 |         for (j = 0; j < SigmaSS[i].size(); j++)
      |                     ~~^~~~~~~~~~~~~~~~~~~
Random_v2.cpp:749:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::vector<double> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  749 |       for (i = 0; i < SigmaRR.size(); i++)
      |                   ~~^~~~~~~~~~~~~~~~
Random_v2.cpp:750:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  750 |         for (j = 0; j < SigmaRR[i].size(); j++)
      |                     ~~^~~~~~~~~~~~~~~~~~~
Random_v2.cpp:752:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::vector<double> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  752 |       for (i = 0; i < SigmaSS.size(); i++)
      |                   ~~^~~~~~~~~~~~~~~~
Random_v2.cpp:753:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::vector<double> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  753 |         for (j = 0; j < SigmaRR.size(); j++) {
      |                     ~~^~~~~~~~~~~~~~~~
Random_v2.cpp:760:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::vector<double> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  760 |       for (i = 0; i < temp7.size(); i++)
      |                   ~~^~~~~~~~~~~~~~
Random_v2.cpp:761:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  761 |         for (j = 0; j < temp7[i].size(); j++)
      |                     ~~^~~~~~~~~~~~~~~~~
Random_v2.cpp: In member function ‘std::vector<double> Random::GaussianGraphicalModel(const std::vector<double>&, const std::vector<std::vector<std::vector<double> > >&, const std::vector<int>&, const std::vector<std::vector<int> >&)’:
Random_v2.cpp:790:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  790 |   for (k = 0; k < UBlocks[k].size(); k++)
      |               ~~^~~~~~~~~~~~~~~~~~~
Random_v2.cpp:807:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  807 |   for (i = 0; i < vec.size(); i++)
      |               ~~^~~~~~~~~~~~
Random_v2.cpp:812:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  812 |   for (i = 0; i < vec.size(); i++) {
      |               ~~^~~~~~~~~~~~
Random_v2.cpp:821:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::vector<std::vector<double> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  821 |   for (k = 1; k < Cov.size(); k++) {
      |               ~~^~~~~~~~~~~~
Random_v2.cpp:834:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::vector<double> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  834 |       for (i = 0; i < CovSS.size(); i++) CovSS[i].resize(CovSS.size());
      |                   ~~^~~~~~~~~~~~~~
Random_v2.cpp:835:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::vector<double> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  835 |       for (i = 0; i < CovRR.size(); i++) CovRR[i].resize(CovRR.size());
      |                   ~~^~~~~~~~~~~~~~
Random_v2.cpp:836:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::vector<double> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  836 |       for (i = 0; i < CovSR.size(); i++) CovSR[i].resize(CovRS.size());
      |                   ~~^~~~~~~~~~~~~~
Random_v2.cpp:837:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::vector<double> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  837 |       for (i = 0; i < CovRS.size(); i++) CovRS[i].resize(CovSR.size());
      |                   ~~^~~~~~~~~~~~~~
Random_v2.cpp:840:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::vector<double> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  840 |       for (i = 0; i < CovSS.size(); i++)
      |                   ~~^~~~~~~~~~~~~~
Random_v2.cpp:841:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  841 |         for (j = 0; j < CovSS[i].size(); j++)
      |                     ~~^~~~~~~~~~~~~~~~~
Random_v2.cpp:844:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::vector<double> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  844 |       for (i = 0; i < CovRR.size(); i++)
      |                   ~~^~~~~~~~~~~~~~
Random_v2.cpp:845:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  845 |         for (j = 0; j < CovRR[i].size(); j++)
      |                     ~~^~~~~~~~~~~~~~~~~
Random_v2.cpp:848:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::vector<double> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  848 |       for (i = 0; i < CovSR.size(); i++)
      |                   ~~^~~~~~~~~~~~~~
Random_v2.cpp:849:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  849 |         for (j = 0; j < CovSR[i].size(); j++) {
      |                     ~~^~~~~~~~~~~~~~~~~
Random_v2.cpp:863:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::vector<double> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  863 |       for (i = 0; i < CovRGivenS.size(); i++)
      |                   ~~^~~~~~~~~~~~~~~~~~~
Random_v2.cpp:864:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  864 |         for (j = 0; j < CovRGivenS[i].size(); j++)
      |                     ~~^~~~~~~~~~~~~~~~~~~~~~
Random_v2.cpp:877:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  877 |       for (i = 0; i < vec.size(); i++)
      |                   ~~^~~~~~~~~~~~
Random_v2.cpp:884:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  884 |       for (i = 0; i < obs.size(); i++)
      |                   ~~^~~~~~~~~~~~
Random_v2.cpp:889:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  889 |       for (i = 0; i < mean.size(); i++)
      |                   ~~^~~~~~~~~~~~~
Random_v2.cpp:894:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  894 |       for (i = 0; i < z.size(); i++)
      |                   ~~^~~~~~~~~~
Random_v2.cpp:899:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  899 |       for (i = 0; i < obs.size(); i++)
      |                   ~~^~~~~~~~~~~~
Random_v2.cpp:901:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  901 |       for (i = 0; i < z.size(); i++)
      |                   ~~^~~~~~~~~~
Random_v2.cpp:913:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  913 |       for (i = 0; i < vec.size(); i++)
      |                   ~~^~~~~~~~~~~~
Random_v2.cpp:918:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  918 |       for (i = 0; i < z.size(); i++)
      |                   ~~^~~~~~~~~~
Random_v2.cpp:923:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  923 |       for (i = 0; i < z.size(); i++)
      |                   ~~^~~~~~~~~~
Random_v2.cpp:928:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  928 |   for (i = 0; i < mean.size(); i++)
      |               ~~^~~~~~~~~~~~~
Random_v2.cpp: In member function ‘std::vector<std::vector<double> > Random::MatrixVariateNormal(const std::vector<std::vector<double> >&, const std::vector<std::vector<double> >&, const std::vector<std::vector<std::vector<double> > >&, const std::vector<int>&, const std::vector<std::vector<int> >&)’:
Random_v2.cpp:948:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::vector<std::vector<double> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  948 |   for (k = 0; k < UBlocks.size(); k++) {
      |               ~~^~~~~~~~~~~~~~~~
Random_v2.cpp:950:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::vector<double> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  950 |     for (i = 0; i < UBlocks[k].size(); i++)
      |                 ~~^~~~~~~~~~~~~~~~~~~
Random_v2.cpp:966:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  966 |   for (j = 0; j < U[0].size(); j++) {
      |               ~~^~~~~~~~~~~~~
Random_v2.cpp:968:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  968 |     for (i = 0; i < vec.size(); i++)
      |                 ~~^~~~~~~~~~~~
Random_v2.cpp:973:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  973 |     for (i = 0; i < vec.size(); i++)
      |                 ~~^~~~~~~~~~~~
Random_v2.cpp:976:11: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  976 |     if (j == U[0].size() - 1) first += z.size();
      |         ~~^~~~~~~~~~~~~~~~~~
Random_v2.cpp:978:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  978 |     for (i = 0; i < z.size(); i++)
      |                 ~~^~~~~~~~~~
Random_v2.cpp:994:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::vector<std::vector<double> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  994 |   for (k = 1; k < Omega.size(); k++) {
      |               ~~^~~~~~~~~~~~~~
Random_v2.cpp:1007:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::vector<double> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1007 |       for (i = 0; i < OmegaSS.size(); i++) OmegaSS[i].resize(OmegaSS.size());
      |                   ~~^~~~~~~~~~~~~~~~
Random_v2.cpp:1008:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::vector<double> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1008 |       for (i = 0; i < OmegaRR.size(); i++) OmegaRR[i].resize(OmegaRR.size());
      |                   ~~^~~~~~~~~~~~~~~~
Random_v2.cpp:1009:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::vector<double> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1009 |       for (i = 0; i < OmegaSR.size(); i++) OmegaSR[i].resize(OmegaRS.size());
      |                   ~~^~~~~~~~~~~~~~~~
Random_v2.cpp:1010:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::vector<double> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1010 |       for (i = 0; i < OmegaRS.size(); i++) OmegaRS[i].resize(OmegaSR.size());
      |                   ~~^~~~~~~~~~~~~~~~
Random_v2.cpp:1012:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::vector<double> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1012 |       for (i = 0; i < OmegaSS.size(); i++)
      |                   ~~^~~~~~~~~~~~~~~~
Random_v2.cpp:1013:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1013 |         for (j = 0; j < OmegaSS[i].size(); j++)
      |                     ~~^~~~~~~~~~~~~~~~~~~
Random_v2.cpp:1016:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::vector<double> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1016 |       for (i = 0; i < OmegaRR.size(); i++)
      |                   ~~^~~~~~~~~~~~~~~~
Random_v2.cpp:1017:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1017 |         for (j = 0; j < OmegaRR[i].size(); j++)
      |                     ~~^~~~~~~~~~~~~~~~~~~
Random_v2.cpp:1020:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::vector<double> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1020 |       for (i = 0; i < OmegaSR.size(); i++)
      |                   ~~^~~~~~~~~~~~~~~~
Random_v2.cpp:1021:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1021 |         for (j = 0; j < OmegaSR[i].size(); j++) {
      |                     ~~^~~~~~~~~~~~~~~~~~~
Random_v2.cpp:1035:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::vector<double> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1035 |       for (i = 0; i < OmegaRGivenS.size(); i++)
      |                   ~~^~~~~~~~~~~~~~~~~~~~~
Random_v2.cpp:1036:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1036 |         for (j = 0; j < OmegaRGivenS[i].size(); j++)
      |                     ~~^~~~~~~~~~~~~~~~~~~~~~~~
Random_v2.cpp:1048:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1048 |       for (j = 0; j < U[0].size(); j++) {
      |                   ~~^~~~~~~~~~~~~
Random_v2.cpp:1050:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1050 |         for (i = 0; i < vec.size(); i++)
      |                     ~~^~~~~~~~~~~~
Random_v2.cpp:1057:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1057 |         for (i = 0; i < obs.size(); i++)
      |                     ~~^~~~~~~~~~~~
Random_v2.cpp:1062:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1062 |         for (i = 0; i < mean.size(); i++)
      |                     ~~^~~~~~~~~~~~~
Random_v2.cpp:1067:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1067 |         for (i = 0; i < z.size(); i++)
      |                     ~~^~~~~~~~~~
Random_v2.cpp:1070:15: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1070 |         if (j == U[0].size() - 1) first += z.size();
      |             ~~^~~~~~~~~~~~~~~~~~
Random_v2.cpp:1072:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1072 |         for (i = 0; i < obs.size(); i++)
      |                     ~~^~~~~~~~~~~~
Random_v2.cpp:1074:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1074 |         for (i = 0; i < z.size(); i++)
      |                     ~~^~~~~~~~~~
Random_v2.cpp:1086:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1086 |       for (j = 0; j < U[k].size(); j++) {
      |                   ~~^~~~~~~~~~~~~
Random_v2.cpp:1088:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1088 |         for (i = 0; i < vec.size(); i++)
      |                     ~~^~~~~~~~~~~~
Random_v2.cpp:1093:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1093 |         for (i = 0; i < vec.size(); i++)
      |                     ~~^~~~~~~~~~~~
Random_v2.cpp:1096:15: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1096 |         if (j == U[k].size() - 1) first += z.size();
      |             ~~^~~~~~~~~~~~~~~~~~
Random_v2.cpp:1098:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1098 |         for (i = 0; i < z.size(); i++)
      |                     ~~^~~~~~~~~~
Random_v2.cpp:1133:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::vector<double> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1133 |   for (i = 0; i < LT.size(); i++) {
      |               ~~^~~~~~~~~~~
Random_v2.cpp:1135:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1135 |     for (j = 0; j < LT[i].size(); j++)
      |                 ~~^~~~~~~~~~~~~~
Random_v2.cpp:1143:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::vector<double> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1143 |   for (i = 0; i < U.size(); i++)
      |               ~~^~~~~~~~~~
Random_v2.cpp:1144:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1144 |     for (j = 0; j < U[i].size(); j++)
      |                 ~~^~~~~~~~~~~~~
Random_v2.cpp: In member function ‘double Random::PotentialHyperInverseWishart(double, const std::vector<std::vector<std::vector<double> > >&, const std::vector<int>&, const std::vector<std::vector<int> >&, const std::vector<std::vector<std::vector<double> > >&)’:
Random_v2.cpp:1183:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::vector<std::vector<double> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1183 |   for (k = 0; k < D.size(); k++)
      |               ~~^~~~~~~~~~
Random_v2.cpp:1188:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::vector<std::vector<double> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1188 |   for (k = 1; k < D.size(); k++)
      |               ~~^~~~~~~~~~
Random_v2.cpp:1196:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::vector<double> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1196 |       for (i = 0; i < DSS.size(); i++) DSS[i].resize(DSS.size());
      |                   ~~^~~~~~~~~~~~
Random_v2.cpp:1197:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::vector<double> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1197 |       for (i = 0; i < SigmaSS.size(); i++) SigmaSS[i].resize(SigmaSS.size());
      |                   ~~^~~~~~~~~~~~~~~~
Random_v2.cpp:1199:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::vector<double> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1199 |       for (i = 0; i < DSS.size(); i++)
      |                   ~~^~~~~~~~~~~~
Random_v2.cpp:1200:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1200 |         for (j = 0; j < DSS[i].size(); j++) {
      |                     ~~^~~~~~~~~~~~~~~
Random_v2.cpp: In member function ‘double Random::PotentialGaussianGraphicalModel(const std::vector<double>&, const std::vector<std::vector<std::vector<double> > >&, const std::vector<int>&, const std::vector<std::vector<int> >&, const std::vector<double>&)’:
Random_v2.cpp:1225:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1225 |   for (i = 0; i < UU.size(); i++)
      |               ~~^~~~~~~~~~~
Random_v2.cpp:1232:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::vector<double> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1232 |   for (k = 0; k < UBlocks.size(); k++)
      |               ~~^~~~~~~~~~~~~~~~
Random_v2.cpp:1236:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::vector<double> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1236 |   for (i = 0; i < Cov[0].size(); i++)
      |               ~~^~~~~~~~~~~~~~~
Random_v2.cpp:1240:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::vector<std::vector<double> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1240 |   for (k = 1; k < Cov.size(); k++) {
      |               ~~^~~~~~~~~~~~
Random_v2.cpp:1241:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<int>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1241 |     for (i = 0; i < oldComponents[k].size(); i++)
      |                 ~~^~~~~~~~~~~~~~~~~~~~~~~~~
Random_v2.cpp:1244:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::vector<double> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1244 |     for (i = 0; i < Cov[k].size() - oldComponents[k].size(); i++)
      |                 ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Random_v2.cpp:1251:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::vector<std::vector<double> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1251 |   for (k = 0; k < Cov.size(); k++) {
      |               ~~^~~~~~~~~~~~
Random_v2.cpp:1258:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::vector<std::vector<double> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1258 |   for (k = 1; k < Cov.size(); k++) {
      |               ~~^~~~~~~~~~~~
Random_v2.cpp:1265:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::vector<double> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1265 |       for (i = 0; i < CovSub.size(); i++) {
      |                   ~~^~~~~~~~~~~~~~~
Random_v2.cpp:1267:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1267 |         for (j = 0; j < CovSub[i].size(); j++)
      |                     ~~^~~~~~~~~~~~~~~~~~
Random_v2.cpp:1271:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1271 |       for (i = 0; i < USub.size(); i++)
      |                   ~~^~~~~~~~~~~~~
Random_v2.cpp: In member function ‘double Random::PotentialMatrixVariateNormal(const std::vector<std::vector<double> >&, const std::vector<std::vector<double> >&, const std::vector<std::vector<double> >&)’:
Random_v2.cpp:1297:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::vector<double> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1297 |   for (i = 0; i < XT.size(); i++) {
      |               ~~^~~~~~~~~~~
Random_v2.cpp:1299:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1299 |     for (j = 0; j < XT[i].size(); j++)
      |                 ~~^~~~~~~~~~~~~~
Random_v2.cpp:1310:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::vector<double> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1310 |   for (i = 0; i < temp3.size(); i++)
      |               ~~^~~~~~~~~~~~~~
Random_v2.cpp: In member function ‘double Random::PotentialMatrixVariateNormal(const std::vector<std::vector<double> >&, const std::vector<std::vector<double> >&, const std::vector<std::vector<std::vector<double> > >&, const std::vector<int>&, const std::vector<std::vector<int> >&, const std::vector<std::vector<double> >&)’:
Random_v2.cpp:1335:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::vector<double> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1335 |   for (i = 0; i < UU.size(); i++)
      |               ~~^~~~~~~~~~~
Random_v2.cpp:1336:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1336 |     for (j = 0; j < UU[i].size(); j++)
      |                 ~~^~~~~~~~~~~~~~
Random_v2.cpp:1343:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::vector<std::vector<double> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1343 |   for (k = 0; k < UBlocks.size(); k++) {
      |               ~~^~~~~~~~~~~~~~~~
Random_v2.cpp:1345:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::vector<double> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1345 |     for (i = 0; i < UBlocks[k].size(); i++)
      |                 ~~^~~~~~~~~~~~~~~~~~~
Random_v2.cpp:1350:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::vector<double> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1350 |   for (i = 0; i < Omega[0].size(); i++)
      |               ~~^~~~~~~~~~~~~~~~~
Random_v2.cpp:1351:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1351 |     for (j = 0; j < UU[first].size(); j++)
      |                 ~~^~~~~~~~~~~~~~~~~~
Random_v2.cpp:1355:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::vector<std::vector<double> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1355 |   for (k = 1; k < Omega.size(); k++) {
      |               ~~^~~~~~~~~~~~~~
Random_v2.cpp:1356:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<int>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1356 |     for (i = 0; i < oldComponents[k].size(); i++)
      |                 ~~^~~~~~~~~~~~~~~~~~~~~~~~~
Random_v2.cpp:1357:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1357 |       for (j = 0; j < UU[first].size(); j++)
      |                   ~~^~~~~~~~~~~~~~~~~~
Random_v2.cpp:1360:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::vector<double> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1360 |     for (i = 0; i < Omega[k].size() - oldComponents[k].size(); i++)
      |                 ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Random_v2.cpp:1361:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1361 |       for (j = 0; j < UU[first].size(); j++)
      |                   ~~^~~~~~~~~~~~~~~~~~
Random_v2.cpp:1380:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::vector<std::vector<double> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1380 |   for (k = 0; k < Omega.size(); k++)
      |               ~~^~~~~~~~~~~~~~
Random_v2.cpp:1385:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::vector<std::vector<double> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1385 |   for (k = 1; k < Omega.size(); k++)
      |               ~~^~~~~~~~~~~~~~
Random_v2.cpp:1391:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::vector<double> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1391 |       for (i = 0; i < OmegaSub.size(); i++) {
      |                   ~~^~~~~~~~~~~~~~~~~
Random_v2.cpp:1393:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1393 |         for (j = 0; j < OmegaSub[i].size(); j++)
      |                     ~~^~~~~~~~~~~~~~~~~~~~
Random_v2.cpp:1396:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::vector<double> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1396 |       for (i = 0; i < USub.size(); i++) {
      |                   ~~^~~~~~~~~~~~~
Random_v2.cpp:1398:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1398 |         for (j = 0; j < USub[i].size(); j++)
      |                     ~~^~~~~~~~~~~~~~~~
Random_v2.cpp: In member function ‘std::vector<int> Random::Permutation(int)’:
Random_v2.cpp:1822:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<int>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1822 |   for (k = 0; k < perm.size(); k++)
      |               ~~^~~~~~~~~~~~~
Random_v2.cpp: In member function ‘double Random::lnGamma(double)’:
Random_v2.cpp:1847:10: warning: unused variable ‘x’ [-Wunused-variable]
 1847 |   double x,y,tt,sum;
      |          ^
g++ -std=gnu++17 -I"/home/biocbuild/bbs-3.21-bioc/R/include" -DNDEBUG   -I/usr/local/include  -DSTRICT_R_HEADERS=1  -fpic  -g -O2  -Wall -DR_NO_REMAP -c Rinterface_v2.cpp -o Rinterface_v2.o
g++ -std=gnu++17 -I"/home/biocbuild/bbs-3.21-bioc/R/include" -DNDEBUG   -I/usr/local/include  -DSTRICT_R_HEADERS=1  -fpic  -g -O2  -Wall -DR_NO_REMAP -c Structure.cpp -o Structure.o
In file included from Structure.cpp:29:
ReportPotential.h: In constructor ‘ReportPotential::ReportPotential(const std::string&, const std::vector<Potential*>&)’:
ReportPotential.h:32:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<Potential*>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
   32 |   for (i = 0; i < model.size(); i++)
      |               ~~^~~~~~~~~~~~~~
ReportPotential.h: In constructor ‘ReportPotential::ReportPotential(double*, const std::vector<Potential*>&)’:
ReportPotential.h:48:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<Potential*>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
   48 |   for (i = 0; i < model.size(); i++)
      |               ~~^~~~~~~~~~~~~~
ReportPotential.h: In member function ‘virtual void ReportPotential::report(const Structure*)’:
ReportPotential.h:69:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<Potential*>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
   69 |       for (i = 0; i < model.size(); i++)
      |                   ~~^~~~~~~~~~~~~~
ReportPotential.h:78:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<Potential*>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
   78 |       for (i = 0; i < model.size(); i++)
      |                   ~~^~~~~~~~~~~~~~
In file included from Structure.cpp:30:
ReportAcceptance.h: In constructor ‘ReportAcceptance::ReportAcceptance(const std::string&, const std::vector<Update*>&)’:
ReportAcceptance.h:32:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<Update*>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
   32 |   for (i = 0; i < update.size(); i++)
      |               ~~^~~~~~~~~~~~~~~
ReportAcceptance.h: In constructor ‘ReportAcceptance::ReportAcceptance(double*, const std::vector<Update*>&)’:
ReportAcceptance.h:48:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<Update*>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
   48 |   for (i = 0; i < update.size(); i++)
      |               ~~^~~~~~~~~~~~~~~
ReportAcceptance.h: In member function ‘virtual void ReportAcceptance::report(const Structure*)’:
ReportAcceptance.h:67:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<Update*>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
   67 |       for (i = 0; i < update.size(); i++)
      |                   ~~^~~~~~~~~~~~~~~
ReportAcceptance.h:76:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<Update*>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
   76 |       for (i = 0; i < update.size(); i++)
      |                   ~~^~~~~~~~~~~~~~~
In file included from ReportProbDelta.h:9,
                 from Structure.cpp:31:
PotentialSum.h: In constructor ‘PotentialSum::PotentialSum(const std::vector<Potential*>&)’:
PotentialSum.h:30:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<Potential*>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
   30 |   for (i = 0; i < term.size(); i++)
      |               ~~^~~~~~~~~~~~~
PotentialSum.h: In destructor ‘virtual PotentialSum::~PotentialSum()’:
PotentialSum.h:41:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<Potential*>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
   41 |   for (i = 0; i < term.size(); i++)
      |               ~~^~~~~~~~~~~~~
PotentialSum.h: In member function ‘virtual double PotentialSum::potential(Random&) const’:
PotentialSum.h:61:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<Potential*>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
   61 |   for (i = 0; i < term.size(); i++)
      |               ~~^~~~~~~~~~~~~
ReportProbDelta.h: In constructor ‘ReportProbDelta::ReportProbDelta(const std::string&, Structure*, int)’:
ReportProbDelta.h:53:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<Potential*>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
   53 |       for (i = 0; i < term.size(); i++)
      |                   ~~^~~~~~~~~~~~~
ReportProbDelta.h: In constructor ‘ReportProbDelta::ReportProbDelta(double*, Structure*, int)’:
ReportProbDelta.h:85:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<Potential*>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
   85 |       for (i = 0; i < term.size(); i++)
      |                   ~~^~~~~~~~~~~~~
ReportProbDelta.h: In destructor ‘virtual ReportProbDelta::~ReportProbDelta()’:
ReportProbDelta.h:96:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<Potential*>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
   96 |   for (i = 0; i < model.size(); i++)
      |               ~~^~~~~~~~~~~~~~
Structure.cpp: In member function ‘void Structure::setParameterValues(std::string&)’:
Structure.cpp:528:8: warning: unused variable ‘c’ [-Wunused-variable]
  528 |   char c;
      |        ^
Structure.cpp: In member function ‘void Structure::setNumberOfUpdates(std::string&, std::vector<int>&, std::vector<Update*>&) const’:
Structure.cpp:1642:15: warning: unused variable ‘nRead’ [-Wunused-variable]
 1642 |           int nRead = sscanf(var1,"%d",&value);
      |               ^~~~~
Structure.cpp:1668:19: warning: unused variable ‘nRead’ [-Wunused-variable]
 1668 |               int nRead = sscanf(var2,"%le",&value);
      |                   ^~~~~
Structure.cpp:1579:12: warning: unused variable ‘c’ [-Wunused-variable]
 1579 |       char c;
      |            ^
Structure.cpp: In member function ‘ReportDiffexpressed* Structure::setReports(std::string&, int&, std::vector<Potential*>&, std::vector<Update*>&, std::vector<Report*>&, int)’:
Structure.cpp:1728:12: warning: unused variable ‘c’ [-Wunused-variable]
 1728 |       char c;
      |            ^
Structure.cpp: In member function ‘ReportDiffexpressed* Structure::setReports(int*, int&, int, char**, std::vector<Potential*>&, std::vector<Update*>&, std::vector<Report*>&, double*, double*, double*, double*, double*, double*, double*, double*, double*, double*, int*, double*, double*, double*, double*, double*, double*, double*, double*, double*, double*, double*, int*, int)’:
Structure.cpp:1971:25: warning: ignoring return value of ‘bool std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::empty() const [with _CharT = char; _Traits = std::char_traits<char>; _Alloc = std::allocator<char>]’, declared with attribute ‘nodiscard’ [-Wunused-result]
 1971 |           filename.empty();
      |           ~~~~~~~~~~~~~~^~
In file included from /usr/include/c++/13/string:54,
                 from Structure.h:4,
                 from Structure.cpp:5:
/usr/include/c++/13/bits/basic_string.h:1220:7: note: declared here
 1220 |       empty() const _GLIBCXX_NOEXCEPT
      |       ^~~~~
Structure.cpp:1983:21: warning: ignoring return value of ‘bool std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::empty() const [with _CharT = char; _Traits = std::char_traits<char>; _Alloc = std::allocator<char>]’, declared with attribute ‘nodiscard’ [-Wunused-result]
 1983 |       filename.empty();
      |       ~~~~~~~~~~~~~~^~
/usr/include/c++/13/bits/basic_string.h:1220:7: note: declared here
 1220 |       empty() const _GLIBCXX_NOEXCEPT
      |       ^~~~~
Structure.cpp:1990:21: warning: ignoring return value of ‘bool std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::empty() const [with _CharT = char; _Traits = std::char_traits<char>; _Alloc = std::allocator<char>]’, declared with attribute ‘nodiscard’ [-Wunused-result]
 1990 |       filename.empty();
      |       ~~~~~~~~~~~~~~^~
/usr/include/c++/13/bits/basic_string.h:1220:7: note: declared here
 1220 |       empty() const _GLIBCXX_NOEXCEPT
      |       ^~~~~
Structure.cpp:1996:21: warning: ignoring return value of ‘bool std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::empty() const [with _CharT = char; _Traits = std::char_traits<char>; _Alloc = std::allocator<char>]’, declared with attribute ‘nodiscard’ [-Wunused-result]
 1996 |       filename.empty();
      |       ~~~~~~~~~~~~~~^~
/usr/include/c++/13/bits/basic_string.h:1220:7: note: declared here
 1220 |       empty() const _GLIBCXX_NOEXCEPT
      |       ^~~~~
Structure.cpp:2002:21: warning: ignoring return value of ‘bool std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::empty() const [with _CharT = char; _Traits = std::char_traits<char>; _Alloc = std::allocator<char>]’, declared with attribute ‘nodiscard’ [-Wunused-result]
 2002 |       filename.empty();
      |       ~~~~~~~~~~~~~~^~
/usr/include/c++/13/bits/basic_string.h:1220:7: note: declared here
 1220 |       empty() const _GLIBCXX_NOEXCEPT
      |       ^~~~~
Structure.cpp:2008:21: warning: ignoring return value of ‘bool std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::empty() const [with _CharT = char; _Traits = std::char_traits<char>; _Alloc = std::allocator<char>]’, declared with attribute ‘nodiscard’ [-Wunused-result]
 2008 |       filename.empty();
      |       ~~~~~~~~~~~~~~^~
/usr/include/c++/13/bits/basic_string.h:1220:7: note: declared here
 1220 |       empty() const _GLIBCXX_NOEXCEPT
      |       ^~~~~
Structure.cpp:2014:21: warning: ignoring return value of ‘bool std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::empty() const [with _CharT = char; _Traits = std::char_traits<char>; _Alloc = std::allocator<char>]’, declared with attribute ‘nodiscard’ [-Wunused-result]
 2014 |       filename.empty();
      |       ~~~~~~~~~~~~~~^~
/usr/include/c++/13/bits/basic_string.h:1220:7: note: declared here
 1220 |       empty() const _GLIBCXX_NOEXCEPT
      |       ^~~~~
Structure.cpp:2020:21: warning: ignoring return value of ‘bool std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::empty() const [with _CharT = char; _Traits = std::char_traits<char>; _Alloc = std::allocator<char>]’, declared with attribute ‘nodiscard’ [-Wunused-result]
 2020 |       filename.empty();
      |       ~~~~~~~~~~~~~~^~
/usr/include/c++/13/bits/basic_string.h:1220:7: note: declared here
 1220 |       empty() const _GLIBCXX_NOEXCEPT
      |       ^~~~~
Structure.cpp:2026:21: warning: ignoring return value of ‘bool std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::empty() const [with _CharT = char; _Traits = std::char_traits<char>; _Alloc = std::allocator<char>]’, declared with attribute ‘nodiscard’ [-Wunused-result]
 2026 |       filename.empty();
      |       ~~~~~~~~~~~~~~^~
/usr/include/c++/13/bits/basic_string.h:1220:7: note: declared here
 1220 |       empty() const _GLIBCXX_NOEXCEPT
      |       ^~~~~
Structure.cpp:2032:21: warning: ignoring return value of ‘bool std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::empty() const [with _CharT = char; _Traits = std::char_traits<char>; _Alloc = std::allocator<char>]’, declared with attribute ‘nodiscard’ [-Wunused-result]
 2032 |       filename.empty();
      |       ~~~~~~~~~~~~~~^~
/usr/include/c++/13/bits/basic_string.h:1220:7: note: declared here
 1220 |       empty() const _GLIBCXX_NOEXCEPT
      |       ^~~~~
Structure.cpp:2038:21: warning: ignoring return value of ‘bool std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::empty() const [with _CharT = char; _Traits = std::char_traits<char>; _Alloc = std::allocator<char>]’, declared with attribute ‘nodiscard’ [-Wunused-result]
 2038 |       filename.empty();
      |       ~~~~~~~~~~~~~~^~
/usr/include/c++/13/bits/basic_string.h:1220:7: note: declared here
 1220 |       empty() const _GLIBCXX_NOEXCEPT
      |       ^~~~~
Structure.cpp:2044:21: warning: ignoring return value of ‘bool std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::empty() const [with _CharT = char; _Traits = std::char_traits<char>; _Alloc = std::allocator<char>]’, declared with attribute ‘nodiscard’ [-Wunused-result]
 2044 |       filename.empty();
      |       ~~~~~~~~~~~~~~^~
/usr/include/c++/13/bits/basic_string.h:1220:7: note: declared here
 1220 |       empty() const _GLIBCXX_NOEXCEPT
      |       ^~~~~
Structure.cpp:2050:21: warning: ignoring return value of ‘bool std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::empty() const [with _CharT = char; _Traits = std::char_traits<char>; _Alloc = std::allocator<char>]’, declared with attribute ‘nodiscard’ [-Wunused-result]
 2050 |       filename.empty();
      |       ~~~~~~~~~~~~~~^~
/usr/include/c++/13/bits/basic_string.h:1220:7: note: declared here
 1220 |       empty() const _GLIBCXX_NOEXCEPT
      |       ^~~~~
Structure.cpp:2056:21: warning: ignoring return value of ‘bool std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::empty() const [with _CharT = char; _Traits = std::char_traits<char>; _Alloc = std::allocator<char>]’, declared with attribute ‘nodiscard’ [-Wunused-result]
 2056 |       filename.empty();
      |       ~~~~~~~~~~~~~~^~
/usr/include/c++/13/bits/basic_string.h:1220:7: note: declared here
 1220 |       empty() const _GLIBCXX_NOEXCEPT
      |       ^~~~~
Structure.cpp:2062:21: warning: ignoring return value of ‘bool std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::empty() const [with _CharT = char; _Traits = std::char_traits<char>; _Alloc = std::allocator<char>]’, declared with attribute ‘nodiscard’ [-Wunused-result]
 2062 |       filename.empty();
      |       ~~~~~~~~~~~~~~^~
/usr/include/c++/13/bits/basic_string.h:1220:7: note: declared here
 1220 |       empty() const _GLIBCXX_NOEXCEPT
      |       ^~~~~
Structure.cpp:2068:21: warning: ignoring return value of ‘bool std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::empty() const [with _CharT = char; _Traits = std::char_traits<char>; _Alloc = std::allocator<char>]’, declared with attribute ‘nodiscard’ [-Wunused-result]
 2068 |       filename.empty();
      |       ~~~~~~~~~~~~~~^~
/usr/include/c++/13/bits/basic_string.h:1220:7: note: declared here
 1220 |       empty() const _GLIBCXX_NOEXCEPT
      |       ^~~~~
Structure.cpp:2074:21: warning: ignoring return value of ‘bool std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::empty() const [with _CharT = char; _Traits = std::char_traits<char>; _Alloc = std::allocator<char>]’, declared with attribute ‘nodiscard’ [-Wunused-result]
 2074 |       filename.empty();
      |       ~~~~~~~~~~~~~~^~
/usr/include/c++/13/bits/basic_string.h:1220:7: note: declared here
 1220 |       empty() const _GLIBCXX_NOEXCEPT
      |       ^~~~~
Structure.cpp:2080:21: warning: ignoring return value of ‘bool std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::empty() const [with _CharT = char; _Traits = std::char_traits<char>; _Alloc = std::allocator<char>]’, declared with attribute ‘nodiscard’ [-Wunused-result]
 2080 |       filename.empty();
      |       ~~~~~~~~~~~~~~^~
/usr/include/c++/13/bits/basic_string.h:1220:7: note: declared here
 1220 |       empty() const _GLIBCXX_NOEXCEPT
      |       ^~~~~
Structure.cpp:2086:21: warning: ignoring return value of ‘bool std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::empty() const [with _CharT = char; _Traits = std::char_traits<char>; _Alloc = std::allocator<char>]’, declared with attribute ‘nodiscard’ [-Wunused-result]
 2086 |       filename.empty();
      |       ~~~~~~~~~~~~~~^~
/usr/include/c++/13/bits/basic_string.h:1220:7: note: declared here
 1220 |       empty() const _GLIBCXX_NOEXCEPT
      |       ^~~~~
Structure.cpp:2092:21: warning: ignoring return value of ‘bool std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::empty() const [with _CharT = char; _Traits = std::char_traits<char>; _Alloc = std::allocator<char>]’, declared with attribute ‘nodiscard’ [-Wunused-result]
 2092 |       filename.empty();
      |       ~~~~~~~~~~~~~~^~
/usr/include/c++/13/bits/basic_string.h:1220:7: note: declared here
 1220 |       empty() const _GLIBCXX_NOEXCEPT
      |       ^~~~~
Structure.cpp:2098:21: warning: ignoring return value of ‘bool std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::empty() const [with _CharT = char; _Traits = std::char_traits<char>; _Alloc = std::allocator<char>]’, declared with attribute ‘nodiscard’ [-Wunused-result]
 2098 |       filename.empty();
      |       ~~~~~~~~~~~~~~^~
/usr/include/c++/13/bits/basic_string.h:1220:7: note: declared here
 1220 |       empty() const _GLIBCXX_NOEXCEPT
      |       ^~~~~
Structure.cpp:2104:21: warning: ignoring return value of ‘bool std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::empty() const [with _CharT = char; _Traits = std::char_traits<char>; _Alloc = std::allocator<char>]’, declared with attribute ‘nodiscard’ [-Wunused-result]
 2104 |       filename.empty();
      |       ~~~~~~~~~~~~~~^~
/usr/include/c++/13/bits/basic_string.h:1220:7: note: declared here
 1220 |       empty() const _GLIBCXX_NOEXCEPT
      |       ^~~~~
Structure.cpp:2110:21: warning: ignoring return value of ‘bool std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::empty() const [with _CharT = char; _Traits = std::char_traits<char>; _Alloc = std::allocator<char>]’, declared with attribute ‘nodiscard’ [-Wunused-result]
 2110 |       filename.empty();
      |       ~~~~~~~~~~~~~~^~
/usr/include/c++/13/bits/basic_string.h:1220:7: note: declared here
 1220 |       empty() const _GLIBCXX_NOEXCEPT
      |       ^~~~~
g++ -std=gnu++17 -I"/home/biocbuild/bbs-3.21-bioc/R/include" -DNDEBUG   -I/usr/local/include  -DSTRICT_R_HEADERS=1  -fpic  -g -O2  -Wall -DR_NO_REMAP -c Update_v2.cpp -o Update_v2.o
Update_v2.cpp: In function ‘void updateOmega_HyperInverseWishart(unsigned int*, int*, std::vector<std::vector<std::vector<double> > >&, int, int, const double*, const double*, const double*, const double*, const double*, double, const std::vector<std::vector<std::vector<double> > >&, const std::vector<int>&, const std::vector<std::vector<int> >&)’:
Update_v2.cpp:3919:10: warning: unused variable ‘pot’ [-Wunused-variable]
 3919 |   double pot = - OmegaGibbs(df,D,oldClique,oldComponents,Q,G,Delta,
      |          ^~~
Update_v2.cpp: In function ‘void updateDDeltaStar_HyperInverseWishart(unsigned int*, int*, double*, int, int, const int*, const double*, const int*, const double*, const int*, const double*, const double*, const double*, const double*, const double*, const std::vector<std::vector<std::vector<double> > >&, const std::vector<int>&, const std::vector<std::vector<int> >&)’:
Update_v2.cpp:3973:10: warning: unused variable ‘pot’ [-Wunused-variable]
 3973 |   double pot = DeltaStarGibbs(oldClique,oldComponents,Q,G,S,newValues,
      |          ^~~
g++ -std=gnu++17 -I"/home/biocbuild/bbs-3.21-bioc/R/include" -DNDEBUG   -I/usr/local/include  -DSTRICT_R_HEADERS=1  -fpic  -g -O2  -Wall -DR_NO_REMAP -c Utility_v2.cpp -o Utility_v2.o
Utility_v2.cpp: In function ‘double nuGibbs(double*, int, int, const int*, double, const double*, const double*, const double*, const double*, const double*, const int*, const double*, const int*, const double*, Random&, int)’:
Utility_v2.cpp:221:12: warning: unused variable ‘detPrior’ [-Wunused-variable]
  221 |     double detPrior = inverse(var,varInv);
      |            ^~~~~~~~
Utility_v2.cpp:228:12: warning: unused variable ‘detPosterior’ [-Wunused-variable]
  228 |     double detPosterior = 1.0 /inverse(varInv,var);
      |            ^~~~~~~~~~~~
Utility_v2.cpp: In function ‘double DeltaGibbs(int, double*, int, int, const int*, double, const double*, const double*, const double*, const double*, const double*, const int*, const double*, const int*, const double*, Random&, int)’:
Utility_v2.cpp:303:9: warning: unused variable ‘s’ [-Wunused-variable]
  303 |     int s;
      |         ^
Utility_v2.cpp:328:12: warning: unused variable ‘detPrior’ [-Wunused-variable]
  328 |     double detPrior = inverse(var,varInv);
      |            ^~~~~~~~
Utility_v2.cpp:334:12: warning: unused variable ‘detPosterior’ [-Wunused-variable]
  334 |     double detPosterior = 1.0 / inverse(varInv,var);
      |            ^~~~~~~~~~~~
Utility_v2.cpp: In function ‘void updateMRF1perfect_onedelta(int, std::vector<int>&, std::vector<int>&, const std::vector<double>&, const std::vector<double>&, const std::vector<std::vector<int> >&, double, double, double, Random&)’:
Utility_v2.cpp:413:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<int>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  413 |   for (gg = 0; gg < neighbour[g].size(); gg++) {
      |                ~~~^~~~~~~~~~~~~~~~~~~~~
Utility_v2.cpp:435:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<int>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  435 |   for (gg = 0; gg < neighbour[g].size(); gg++) {
      |                ~~~^~~~~~~~~~~~~~~~~~~~~
Utility_v2.cpp:447:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<int>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  447 |     for (ggg = 0; ggg < neighbour[gene].size(); ggg++) {
      |                   ~~~~^~~~~~~~~~~~~~~~~~~~~~~~
Utility_v2.cpp: In function ‘double perfectMRF1_onedelta(int*, int, const std::vector<std::vector<int> >&, const std::vector<double>&, const std::vector<double>&, double, double, double, unsigned int*, int)’:
Utility_v2.cpp:556:15: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<int>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  556 |         if (b == start.size() - 1) nextSeed = ran.ChangeSeed(dummy);
      |             ~~^~~~~~~~~~~~~~~~~~~
Utility_v2.cpp:600:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<int>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  600 |     for (gg = 0; gg < neighbour[g].size(); gg++)
      |                  ~~~^~~~~~~~~~~~~~~~~~~~~
Utility_v2.cpp: In function ‘void updateMRF2perfect_onedelta(int, std::vector<int>&, std::vector<int>&, const std::vector<double>&, const std::vector<double>&, const std::vector<std::vector<int> >&, double, double, Random&)’:
Utility_v2.cpp:635:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<int>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  635 |   for (k = 0; k < neighbour[g].size(); k++) {
      |               ~~^~~~~~~~~~~~~~~~~~~~~
Utility_v2.cpp: In function ‘double perfectMRF2_onedelta(int*, int, const std::vector<std::vector<int> >&, const std::vector<double>&, const std::vector<double>&, double, double, unsigned int*, int)’:
Utility_v2.cpp:723:15: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<int>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  723 |         if (b == start.size() - 1) nextSeed = ran.ChangeSeed(dummy);
      |             ~~^~~~~~~~~~~~~~~~~~~
Utility_v2.cpp:760:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<int>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  760 |     for (k = 0; k < neighbour[g].size(); k++) {
      |                 ~~^~~~~~~~~~~~~~~~~~~~~
Utility_v2.cpp:764:13: warning: unused variable ‘ngg’ [-Wunused-variable]
  764 |         int ngg = neighbour[gg].size();
      |             ^~~
Utility_v2.cpp: In function ‘void updateMRF2perfect(int, int, int, int, std::vector<int>&, std::vector<int>&, const std::vector<double>&, const std::vector<double>&, const std::vector<std::vector<int> >&, double, double, double, Random&)’:
Utility_v2.cpp:793:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<int>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  793 |   for (k = 0; k < neighbour[g].size(); k++) {
      |               ~~^~~~~~~~~~~~~~~~~~~~~
Utility_v2.cpp: In function ‘double perfectMRF2(int*, int, int, const std::vector<std::vector<int> >&, const std::vector<double>&, const std::vector<double>&, double, double, double, unsigned int*, int)’:
Utility_v2.cpp:904:15: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<int>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  904 |         if (b == start.size() - 1) nextSeed = ran.ChangeSeed(dummy);
      |             ~~^~~~~~~~~~~~~~~~~~~
Utility_v2.cpp:949:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<int>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  949 |       for (k = 0; k < neighbour[g].size(); k++) {
      |                   ~~^~~~~~~~~~~~~~~~~~~~~
Utility_v2.cpp:954:15: warning: unused variable ‘ngg’ [-Wunused-variable]
  954 |           int ngg = neighbour[gg].size();
      |               ^~~
Utility_v2.cpp: In function ‘double OmegaGibbs(double, const std::vector<std::vector<std::vector<double> > >&, const std::vector<int>&, const std::vector<std::vector<int> >&, int, int, const double*, const double*, const double*, const double*, const double*, std::vector<std::vector<std::vector<double> > >&, Random&, int)’:
Utility_v2.cpp:1027:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::vector<double> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1027 |   for (g1 = 0; g1 < DNew[0].size(); g1++)
      |                ~~~^~~~~~~~~~~~~~~~
Utility_v2.cpp:1028:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1028 |     for (g2 = 0; g2 < DNew[0][g1].size(); g2++)
      |                  ~~~^~~~~~~~~~~~~~~~~~~~
Utility_v2.cpp:1036:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::vector<std::vector<double> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1036 |   for (k = 1; k < DNew.size(); k++) {
      |               ~~^~~~~~~~~~~~~
Utility_v2.cpp:1041:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<int>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1041 |     for (g = 0; g < oldComponents[k].size(); g++) {
      |                 ~~^~~~~~~~~~~~~~~~~~~~~~~~~
Utility_v2.cpp:1047:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<int>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1047 |     for (g = 0; g < cliqueSize - oldComponents[k].size(); g++) {
      |                 ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Utility_v2.cpp:1059:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::vector<double> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1059 |     for (g1 = 0; g1 < DNew[k].size(); g1++)
      |                  ~~~^~~~~~~~~~~~~~~~
Utility_v2.cpp:1060:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1060 |       for (g2 = 0; g2 < DNew[k][g1].size(); g2++)
      |                    ~~~^~~~~~~~~~~~~~~~~~~~
Utility_v2.cpp: In function ‘double DeltaStarGibbs(const std::vector<int>&, const std::vector<std::vector<int> >&, int, int, const int*, double*, const double*, const double*, const double*, const double*, const double*, const double*, const int*, const int*, const double*, const std::vector<std::vector<std::vector<double> > >&, Random&, int)’:
Utility_v2.cpp:1096:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::vector<std::vector<double> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1096 |   for (k = 0; k < OmegaInv.size(); k++)
      |               ~~^~~~~~~~~~~~~~~~~
Utility_v2.cpp:1101:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::vector<std::vector<double> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1101 |   for (k = 0; k < OmegaSep.size(); k++) {
      |               ~~^~~~~~~~~~~~~~~~~
Utility_v2.cpp:1104:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<int>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1104 |     for (i = 0; i < oldComponents[k].size(); i++) {
      |                 ~~^~~~~~~~~~~~~~~~~~~~~~~~~
Utility_v2.cpp:1107:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<int>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1107 |       for (j = 0; j < oldComponents[k].size(); j++) {
      |                   ~~^~~~~~~~~~~~~~~~~~~~~~~~~
Utility_v2.cpp:1115:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::vector<std::vector<double> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1115 |   for (k = 0; k < OmegaSep.size(); k++) {
      |               ~~^~~~~~~~~~~~~~~~~
Utility_v2.cpp:1129:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::vector<std::vector<double> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1129 |   for (k = 0; k < Omega.size(); k++) {
      |               ~~^~~~~~~~~~~~~~
Utility_v2.cpp:1133:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<int>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1133 |     for (gg = 0; gg < oldComponents[k].size(); gg++)
      |                  ~~~^~~~~~~~~~~~~~~~~~~~~~~~~
Utility_v2.cpp:1135:43: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::vector<double> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1135 |     for (gg = oldComponents[k].size(); gg < Omega[k].size(); gg++) {
      |                                        ~~~^~~~~~~~~~~~~~~~~
Utility_v2.cpp:1238:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::vector<std::vector<double> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1238 |   for (k = 0; k < OmegaInv.size(); k++) {
      |               ~~^~~~~~~~~~~~~~~~~
Utility_v2.cpp:1240:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<int>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1240 |     for (r = 0; r < nr[k].size(); r++) {
      |                 ~~^~~~~~~~~~~~~~
Utility_v2.cpp:1242:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<int>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1242 |       for (s = 0; s < nr[k].size(); s++) {
      |                   ~~^~~~~~~~~~~~~~
Utility_v2.cpp:1258:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::vector<std::vector<double> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1258 |   for (k = 0; k < OmegaSepInv.size(); k++) {
      |               ~~^~~~~~~~~~~~~~~~~~~~
Utility_v2.cpp:1260:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<int>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1260 |     for (r = 0; r < oldComponents[k].size(); r++) {
      |                 ~~^~~~~~~~~~~~~~~~~~~~~~~~~
Utility_v2.cpp:1262:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<int>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1262 |       for (s = 0; s < oldComponents[k].size(); s++) {
      |                   ~~^~~~~~~~~~~~~~~~~~~~~~~~~
Utility_v2.cpp:1409:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1409 |   for (index = 0; index < L.size(); index++)
      |                   ~~~~~~^~~~~~~~~~
Utility_v2.cpp:1458:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::map<int, double> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1458 |   for (k = 0; k < VinvSparseReversed.size(); k++)
      |               ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
Utility_v2.cpp:1460:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::map<int, double> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1460 |   for (k = 0; k < VinvSparseReversed.size(); k++) {
      |               ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
Utility_v2.cpp:1463:33: warning: variable ‘itextra’ set but not used [-Wunused-but-set-variable]
 1463 |       map<int,double>::iterator itextra = VinvSparse[k].end();
      |                                 ^~~~~~~
Utility_v2.cpp:1501:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::map<int, double> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1501 |   for (index = 0; index < cholReversed.size(); index++)
      |                   ~~~~~~^~~~~~~~~~~~~~~~~~~~~
Utility_v2.cpp:1563:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::map<int, double> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1563 |   for (k = 0; k < chol.size(); k++)
      |               ~~^~~~~~~~~~~~~
Utility_v2.cpp:1565:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::map<int, double> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1565 |   for (k = 0; k < cholReversed.size(); k++) {
      |               ~~^~~~~~~~~~~~~~~~~~~~~
Utility_v2.cpp:1600:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::map<int, double> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1600 |   for (k = 0; k < cholT.size(); k++)
      |               ~~^~~~~~~~~~~~~~
Utility_v2.cpp:1602:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::map<int, double> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1602 |   for (i = 0; i < chol.size(); i++) {
      |               ~~^~~~~~~~~~~~~
Utility_v2.cpp:1653:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1653 |   for (i = 0; i < mean.size(); i++) {
      |               ~~^~~~~~~~~~~~~
Utility_v2.cpp:1693:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1693 |     for (k = 0; k < z.size(); k++)
      |                 ~~^~~~~~~~~~
Utility_v2.cpp:1713:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1713 |     for (i = 0; i < sample.size(); i++) {
      |                 ~~^~~~~~~~~~~~~~~
Utility_v2.cpp:1779:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1779 |   for (i = 0; i < sample.size(); i++) {
      |               ~~^~~~~~~~~~~~~~~
Utility_v2.cpp: In function ‘void inverseTransformOmega(const std::vector<std::vector<std::vector<double> > >&, double*)’:
Utility_v2.cpp:1875:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::vector<std::vector<double> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1875 |   for (k = 0; k < OmegaTransformed.size(); k++) {
      |               ~~^~~~~~~~~~~~~~~~~~~~~~~~~
Utility_v2.cpp:1877:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::vector<double> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1877 |     for (i = 0; i < OmegaTransformed[k].size(); i++)
      |                 ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
g++ -std=gnu++17 -I"/home/biocbuild/bbs-3.21-bioc/R/include" -DNDEBUG   -I/usr/local/include  -DSTRICT_R_HEADERS=1  -fpic  -g -O2  -Wall -DR_NO_REMAP -c diffExpressed_main.cpp -o diffExpressed_main.o
In file included from diffExpressed_main.cpp:22:
PotentialX.h: In destructor ‘virtual PotentialX::~PotentialX()’:
PotentialX.h:44:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<Potential*>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
   44 |   for (i = 0; i < model.size(); i++)
      |               ~~^~~~~~~~~~~~~~
PotentialX.h: In member function ‘virtual double PotentialX::potential(Random&) const’:
PotentialX.h:64:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<Potential*>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
   64 |   for (i = 0; i < model.size(); i++)
      |               ~~^~~~~~~~~~~~~~
In file included from diffExpressed_main.cpp:31:
PotentialSigma2.h: In destructor ‘virtual PotentialSigma2::~PotentialSigma2()’:
PotentialSigma2.h:44:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<Potential*>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
   44 |   for (i = 0; i < model.size(); i++)
      |               ~~^~~~~~~~~~~~~~
PotentialSigma2.h: In member function ‘virtual double PotentialSigma2::potential(Random&) const’:
PotentialSigma2.h:64:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<Potential*>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
   64 |   for (i = 0; i < model.size(); i++)
      |               ~~^~~~~~~~~~~~~~
In file included from diffExpressed_main.cpp:32:
PotentialPhi.h: In destructor ‘virtual PotentialPhi::~PotentialPhi()’:
PotentialPhi.h:44:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<Potential*>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
   44 |   for (i = 0; i < model.size(); i++)
      |               ~~^~~~~~~~~~~~~~
PotentialPhi.h: In member function ‘virtual double PotentialPhi::potential(Random&) const’:
PotentialPhi.h:64:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<Potential*>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
   64 |   for (i = 0; i < model.size(); i++)
      |               ~~^~~~~~~~~~~~~~
In file included from diffExpressed_main.cpp:33:
PotentialSum.h: In constructor ‘PotentialSum::PotentialSum(const std::vector<Potential*>&)’:
PotentialSum.h:30:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<Potential*>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
   30 |   for (i = 0; i < term.size(); i++)
      |               ~~^~~~~~~~~~~~~
PotentialSum.h: In destructor ‘virtual PotentialSum::~PotentialSum()’:
PotentialSum.h:41:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<Potential*>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
   41 |   for (i = 0; i < term.size(); i++)
      |               ~~^~~~~~~~~~~~~
PotentialSum.h: In member function ‘virtual double PotentialSum::potential(Random&) const’:
PotentialSum.h:61:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<Potential*>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
   61 |   for (i = 0; i < term.size(); i++)
      |               ~~^~~~~~~~~~~~~
In file included from diffExpressed_main.cpp:41:
UpdateDeltaMH.h: In constructor ‘UpdateDeltaMH::UpdateDeltaMH(Structure*, int)’:
UpdateDeltaMH.h:47:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<Potential*>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
   47 |       for (i = 0; i < term.size(); i++)
      |                   ~~^~~~~~~~~~~~~
UpdateDeltaMH.h: In destructor ‘virtual UpdateDeltaMH::~UpdateDeltaMH()’:
UpdateDeltaMH.h:59:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<Potential*>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
   59 |   for (i = 0; i < model.size(); i++)
      |               ~~^~~~~~~~~~~~~~
In file included from UpdateSigma2MH.h:4,
                 from diffExpressed_main.cpp:43:
UpdateMultiplicativePositive.h: In constructor ‘UpdateMultiplicativePositive::UpdateMultiplicativePositive(const std::vector<Potential*>&, const std::vector<double*>&, double)’:
UpdateMultiplicativePositive.h:50:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<Potential*>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
   50 |   for (i = 0; i < model.size(); i++)
      |               ~~^~~~~~~~~~~~~~
UpdateMultiplicativePositive.h:53:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double*>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
   53 |   for (i = 0; i < variable.size(); i++)
      |               ~~^~~~~~~~~~~~~~~~~
UpdateMultiplicativePositive.h: In constructor ‘UpdateMultiplicativePositive::UpdateMultiplicativePositive(const Potential*, const std::vector<double*>&, double)’:
UpdateMultiplicativePositive.h:76:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double*>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
   76 |   for (i = 0; i < variable.size(); i++)
      |               ~~^~~~~~~~~~~~~~~~~
UpdateMultiplicativePositive.h: In constructor ‘UpdateMultiplicativePositive::UpdateMultiplicativePositive(const std::vector<Potential*>&, const std::vector<double*>&, const std::vector<double*>&, double)’:
UpdateMultiplicativePositive.h:124:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<Potential*>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  124 |   for (i = 0; i < model.size(); i++)
      |               ~~^~~~~~~~~~~~~~
UpdateMultiplicativePositive.h:127:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double*>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  127 |   for (i = 0; i < variable1.size(); i++)
      |               ~~^~~~~~~~~~~~~~~~~~
UpdateMultiplicativePositive.h:130:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double*>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  130 |   for (i = 0; i < variable2.size(); i++)
      |               ~~^~~~~~~~~~~~~~~~~~
UpdateMultiplicativePositive.h: In constructor ‘UpdateMultiplicativePositive::UpdateMultiplicativePositive(const Potential*, const std::vector<double*>&, const std::vector<double*>&, double)’:
UpdateMultiplicativePositive.h:159:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double*>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  159 |   for (i = 0; i < variable1.size(); i++)
      |               ~~^~~~~~~~~~~~~~~~~~
UpdateMultiplicativePositive.h:162:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double*>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  162 |   for (i = 0; i < variable2.size(); i++)
      |               ~~^~~~~~~~~~~~~~~~~~
UpdateMultiplicativePositive.h: In member function ‘virtual int UpdateMultiplicativePositive::update(Random&)’:
UpdateMultiplicativePositive.h:213:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double*>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  213 |   for (i = 0; i < variable1.size(); i++)
      |               ~~^~~~~~~~~~~~~~~~~~
UpdateSigma2MH.h: In constructor ‘UpdateSigma2MH::UpdateSigma2MH(Structure*, double)’:
UpdateSigma2MH.h:49:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<Potential*>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
   49 |         for (i = 0; i < term.size(); i++)
      |                     ~~^~~~~~~~~~~~~
UpdateSigma2MH.h: In destructor ‘virtual UpdateSigma2MH::~UpdateSigma2MH()’:
UpdateSigma2MH.h:61:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<Update*>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
   61 |   for (i = 0; i < up.size(); i++)
      |               ~~^~~~~~~~~~~
UpdateSigma2MH.h: In member function ‘virtual void UpdateSigma2MH::setEpsilon(double)’:
UpdateSigma2MH.h:71:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<Update*>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
   71 |   for (i = 0; i < up.size(); i++)
      |               ~~^~~~~~~~~~~
UpdateSigma2MH.h: In member function ‘virtual int UpdateSigma2MH::update(Random&)’:
UpdateSigma2MH.h:96:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<Update*>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
   96 |   for (i = 0; i < up.size(); i++)
      |               ~~^~~~~~~~~~~
In file included from diffExpressed_main.cpp:44:
UpdateTMH.h: In constructor ‘UpdateTMH::UpdateTMH(Structure*, const Potential*, double)’:
UpdateTMH.h:48:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<Potential*>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
   48 |       for (i = 0; i < term.size(); i++)
      |                   ~~^~~~~~~~~~~~~
UpdateTMH.h: In destructor ‘virtual UpdateTMH::~UpdateTMH()’:
UpdateTMH.h:60:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<Update*>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
   60 |   for (i = 0; i < up.size(); i++)
      |               ~~^~~~~~~~~~~
UpdateTMH.h: In member function ‘virtual int UpdateTMH::update(Random&)’:
UpdateTMH.h:84:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<Update*>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
   84 |   for (i = 0; i < up.size(); i++)
      |               ~~^~~~~~~~~~~
In file included from diffExpressed_main.cpp:45:
UpdateLMH.h: In constructor ‘UpdateLMH::UpdateLMH(Structure*, const Potential*, double)’:
UpdateLMH.h:49:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<Potential*>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
   49 |       for (i = 0; i < term.size(); i++)
      |                   ~~^~~~~~~~~~~~~
UpdateLMH.h: In destructor ‘virtual UpdateLMH::~UpdateLMH()’:
UpdateLMH.h:61:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<Update*>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
   61 |   for (i = 0; i < up.size(); i++)
      |               ~~^~~~~~~~~~~
UpdateLMH.h: In member function ‘virtual void UpdateLMH::setEpsilon(double)’:
UpdateLMH.h:73:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<Update*>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
   73 |   for (i = 0; i < up.size(); i++)
      |               ~~^~~~~~~~~~~
UpdateLMH.h: In member function ‘virtual int UpdateLMH::update(Random&)’:
UpdateLMH.h:99:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<Update*>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
   99 |   for (i = 0; i < up.size(); i++)
      |               ~~^~~~~~~~~~~
In file included from diffExpressed_main.cpp:46:
UpdatePhiMH.h: In constructor ‘UpdatePhiMH::UpdatePhiMH(Structure*, double)’:
UpdatePhiMH.h:45:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<Potential*>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
   45 |         for (i = 0; i < term.size(); i++)
      |                     ~~^~~~~~~~~~~~~
UpdatePhiMH.h: In destructor ‘virtual UpdatePhiMH::~UpdatePhiMH()’:
UpdatePhiMH.h:57:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<Update*>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
   57 |   for (i = 0; i < up.size(); i++)
      |               ~~^~~~~~~~~~~
UpdatePhiMH.h: In member function ‘virtual void UpdatePhiMH::setEpsilon(double)’:
UpdatePhiMH.h:69:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<Update*>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
   69 |   for (i = 0; i < up.size(); i++)
      |               ~~^~~~~~~~~~~
UpdatePhiMH.h: In member function ‘virtual int UpdatePhiMH::update(Random&)’:
UpdatePhiMH.h:96:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<Update*>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
   96 |   for (i = 0; i < up.size(); i++)
      |               ~~^~~~~~~~~~~
In file included from diffExpressed_main.cpp:47:
UpdateThetaMH.h: In constructor ‘UpdateThetaMH::UpdateThetaMH(Structure*, const Potential*, double)’:
UpdateThetaMH.h:49:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<Potential*>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
   49 |       for (i = 0; i < term.size(); i++)
      |                   ~~^~~~~~~~~~~~~
UpdateThetaMH.h: In destructor ‘virtual UpdateThetaMH::~UpdateThetaMH()’:
UpdateThetaMH.h:61:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<Update*>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
   61 |   for (i = 0; i < up.size(); i++)
      |               ~~^~~~~~~~~~~
UpdateThetaMH.h: In member function ‘virtual int UpdateThetaMH::update(Random&)’:
UpdateThetaMH.h:85:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<Update*>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
   85 |   for (i = 0; i < up.size(); i++)
      |               ~~^~~~~~~~~~~
In file included from diffExpressed_main.cpp:48:
UpdateLambdaMH.h: In constructor ‘UpdateLambdaMH::UpdateLambdaMH(Structure*, const Potential*, double)’:
UpdateLambdaMH.h:47:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<Potential*>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
   47 |       for (i = 0; i < term.size(); i++)
      |                   ~~^~~~~~~~~~~~~
UpdateLambdaMH.h: In destructor ‘virtual UpdateLambdaMH::~UpdateLambdaMH()’:
UpdateLambdaMH.h:59:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<Update*>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
   59 |   for (i = 0; i < up.size(); i++)
      |               ~~^~~~~~~~~~~
UpdateLambdaMH.h: In member function ‘virtual int UpdateLambdaMH::update(Random&)’:
UpdateLambdaMH.h:83:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<Update*>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
   83 |   for (i = 0; i < up.size(); i++)
      |               ~~^~~~~~~~~~~
In file included from diffExpressed_main.cpp:143:
PotentialFunction.h: In function ‘void xdeLIN_main(int*, int*, int*, int*, int*, int*, int*, double*, int*, int*, double*, double*, double*, double*, double*, double*, double*, double*, int*, double*, double*, double*, double*, double*, double*, double*, double*, double*, double*, int*, double*, int*, int*, char**, double*, double*, double*, double*, double*, double*, double*, double*, double*, double*, int*, double*, double*, double*, double*, double*, double*, double*, double*, double*, double*, double*, int*)’:
PotentialFunction.h:55:15: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<Potential*>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
   55 | for (i = 0; i < term.size(); i++)
      |             ~~^~~~~~~~~~~~~
PotentialFunction.h:55:1: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
   55 | for (i = 0; i < term.size(); i++)
      | ^~~
PotentialFunction.h:62:6: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
   62 |      vector<Update *> update;
      |      ^~~~~~
diffExpressed_main.cpp:202:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<Update*>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  202 |         for (k = 0; k < update.size(); k++)
      |                     ~~^~~~~~~~~~~~~~~
diffExpressed_main.cpp:217:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<Report*>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  217 |             for (k = 0; k < report.size(); k++)
      |                         ~~^~~~~~~~~~~~~~~
diffExpressed_main.cpp:224:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<Report*>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  224 |     for (i = 0; i < report.size(); i++)
      |                 ~~^~~~~~~~~~~~~~~
diffExpressed_main.cpp:227:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<Update*>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  227 |     for (i = 0; i < update.size(); i++)
      |                 ~~^~~~~~~~~~~~~~~
gcc -I"/home/biocbuild/bbs-3.21-bioc/R/include" -DNDEBUG   -I/usr/local/include  -DSTRICT_R_HEADERS=1  -fpic  -g -O2  -Wall -c registerDynamicSymbol.c -o registerDynamicSymbol.o
g++ -std=gnu++17 -shared -L/home/biocbuild/bbs-3.21-bioc/R/lib -L/usr/local/lib -o XDE.so Cholesky.o Matrix_v2.o Potential_v2.o Random_v2.o Rinterface_v2.o Structure.o Update_v2.o Utility_v2.o diffExpressed_main.o registerDynamicSymbol.o -lm -L/home/biocbuild/bbs-3.21-bioc/R/lib -lR
installing to /home/biocbuild/bbs-3.21-bioc/R/site-library/00LOCK-XDE/00new/XDE/libs
** R
** data
** inst
** byte-compile and prepare package for lazy loading
Creating a new generic function for ‘qqplot’ in package ‘XDE’
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (XDE)