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### Running command:
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###   /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data TransView
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* checking for file ‘TransView/DESCRIPTION’ ... OK
* preparing ‘TransView’:
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to build vignettes
      -----------------------------------
* installing *source* package ‘TransView’ ...
** using staged installation
** libs
using C compiler: ‘Apple clang version 15.0.0 (clang-1500.1.0.2.5)’
using SDK: ‘MacOSX11.3.sdk’
clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library/Rhtslib/include' -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -c R_init_TransView.c -o R_init_TransView.o
clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library/Rhtslib/include' -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -c bam_plbuf.c -o bam_plbuf.o
clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library/Rhtslib/include' -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -c bin_density.c -o bin_density.o
clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library/Rhtslib/include' -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -c construct_dc.c -o construct_dc.o
In file included from construct_dc.c:23:
In file included from ./parse_sam.h:4:
In file included from /Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library/Rhtslib/include/samtools-1.7-compat.h:5:
In file included from /Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library/Rhtslib/include/htslib/sam.h:33:
In file included from /Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library/Rhtslib/include/htslib/hts.h:36:
/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library/Rhtslib/include/htslib/hts_log.h:76:1: warning: '__format__' attribute argument not supported: Rprintf [-Wignored-attributes]
HTS_FORMAT(HTS_PRINTF_FMT, 3, 4);
^
/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library/Rhtslib/include/htslib/hts_defs.h:101:53: note: expanded from macro 'HTS_FORMAT'
#define HTS_FORMAT(type, idx, first) __attribute__((__format__ (type, idx, first)))
                                                    ^
construct_dc.c:58:30: error: call to undeclared function 'Calloc'; ISO C99 and later do not support implicit function declarations [-Wimplicit-function-declaration]
        ft->sequence_name = (char**)Calloc(flen,char*);
                                    ^
construct_dc.c:58:42: error: expected expression
        ft->sequence_name = (char**)Calloc(flen,char*);
                                                ^
construct_dc.c:59:39: error: unexpected type name 'int32_t': expected expression
        ft->values = (int32_t **)Calloc(flen,int32_t*);
                                             ^
construct_dc.c:59:47: error: expected expression
        ft->values = (int32_t **)Calloc(flen,int32_t*);
                                                     ^
construct_dc.c:60:44: error: unexpected type name 'int32_t': expected expression
        ft->value_length = (int32_t *)Calloc(flen,int32_t);
                                                  ^
construct_dc.c:65:70: error: expected expression
                ft->sequence_name[j] = Calloc(strlen(CHAR(STRING_ELT(fnames, j))), char);
                                                                                   ^
construct_dc.c:85:27: error: call to undeclared function 'Free'; ISO C99 and later do not support implicit function declarations [-Wimplicit-function-declaration]
                if(ft->sequence_name[j])Free(ft->sequence_name[j]);
                                        ^
construct_dc.c:85:27: note: did you mean 'free'?
/Library/Developer/CommandLineTools/SDKs/MacOSX11.sdk/usr/include/malloc/_malloc.h:42:7: note: 'free' declared here
void     free(void *);
         ^
construct_dc.c:87:23: error: call to undeclared function 'Free'; ISO C99 and later do not support implicit function declarations [-Wimplicit-function-declaration]
        if(ft->sequence_name)Free(ft->sequence_name);
                             ^
construct_dc.c:122:2: error: call to undeclared function 'Free'; ISO C99 and later do not support implicit function declarations [-Wimplicit-function-declaration]
        Free(cptr);
        ^
construct_dc.c:172:13: error: call to undeclared function 'Calloc'; ISO C99 and later do not support implicit function declarations [-Wimplicit-function-declaration]
        proc_chrom=Calloc(bam_file->header->n_targets,uint32_t);
                   ^
construct_dc.c:172:48: error: unexpected type name 'uint32_t': expected expression
        proc_chrom=Calloc(bam_file->header->n_targets,uint32_t);
                                                      ^
construct_dc.c:198:30: error: unexpected type name 'usersize': expected expression
                cptr = Calloc(cs.max_pos+1,usersize);
                                           ^
construct_dc.c:199:39: error: unexpected type name 'uint32_t': expected expression
                lstart_ind=Calloc(cs.min_indexspace,uint32_t);
                                                    ^
construct_dc.c:200:37: error: unexpected type name 'uint32_t': expected expression
                lend_ind=Calloc(cs.min_indexspace,uint32_t);
                                                  ^
construct_dc.c:347:2: error: call to undeclared function 'Free'; ISO C99 and later do not support implicit function declarations [-Wimplicit-function-declaration]
        Free(proc_chrom);
        ^
1 warning and 15 errors generated.
make: *** [construct_dc.o] Error 1
ERROR: compilation failed for package ‘TransView’
* removing ‘/private/var/folders/r0/l4fjk6cj5xj0j3brt4bplpl40000gt/T/Rtmp6IC1vt/Rinst773871c615d0/TransView’
      -----------------------------------
ERROR: package installation failed