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This page was generated on 2024-12-10 11:46 -0500 (Tue, 10 Dec 2024).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 24.04.1 LTS)x86_64R Under development (unstable) (2024-10-21 r87258) -- "Unsuffered Consequences" 4749
palomino7Windows Server 2022 Datacenterx64R Under development (unstable) (2024-10-26 r87273 ucrt) -- "Unsuffered Consequences" 4461
lconwaymacOS 12.7.1 Montereyx86_64R Under development (unstable) (2024-11-20 r87352) -- "Unsuffered Consequences" 4411
kjohnson3macOS 13.7.1 Venturaarm64R Under development (unstable) (2024-11-20 r87352) -- "Unsuffered Consequences" 4366
kunpeng2Linux (openEuler 22.03 LTS-SP1)aarch64R Under development (unstable) (2024-11-24 r87369) -- "Unsuffered Consequences" 4276
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 2103/2272HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
TBSignatureProfiler 1.19.0  (landing page)
Aubrey R. Odom
Snapshot Date: 2024-12-09 13:40 -0500 (Mon, 09 Dec 2024)
git_url: https://git.bioconductor.org/packages/TBSignatureProfiler
git_branch: devel
git_last_commit: 43e6165
git_last_commit_date: 2024-12-08 17:49:15 -0500 (Sun, 08 Dec 2024)
nebbiolo1Linux (Ubuntu 24.04.1 LTS) / x86_64  OK    ERROR  skipped
palomino7Windows Server 2022 Datacenter / x64  OK    ERROR  skippedskipped
lconwaymacOS 12.7.1 Monterey / x86_64  OK    ERROR  skippedskipped
kjohnson3macOS 13.7.1 Ventura / arm64  OK    ERROR  skippedskipped
kunpeng2Linux (openEuler 22.03 LTS-SP1) / aarch64  OK    ERROR  skipped

BUILD results for TBSignatureProfiler on kunpeng2

To the developers/maintainers of the TBSignatureProfiler package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/TBSignatureProfiler.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.
- See Martin Grigorov's blog post for how to debug Linux ARM64 related issues on a x86_64 host.

raw results


Summary

Package: TBSignatureProfiler
Version: 1.19.0
Command: /home/biocbuild/R/R/bin/R CMD build --keep-empty-dirs --no-resave-data TBSignatureProfiler
StartedAt: 2024-12-09 21:10:43 -0000 (Mon, 09 Dec 2024)
EndedAt: 2024-12-09 21:10:49 -0000 (Mon, 09 Dec 2024)
EllapsedTime: 6.0 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/R/R/bin/R CMD build --keep-empty-dirs --no-resave-data TBSignatureProfiler
###
##############################################################################
##############################################################################


* checking for file ‘TBSignatureProfiler/DESCRIPTION’ ... OK
* preparing ‘TBSignatureProfiler’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘tbspVignette.Rmd’ using rmarkdown
Error: processing vignette 'tbspVignette.Rmd' failed with diagnostics:
unable to load shared object '/home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library/fastmap/libs/fastmap.so':
  /usr/lib64/libstdc++.so.6: version `GLIBCXX_3.4.29' not found (required by /home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library/fastmap/libs/fastmap.so)
--- failed re-building ‘tbspVignette.Rmd’

SUMMARY: processing the following file failed:
  ‘tbspVignette.Rmd’

Error: Vignette re-building failed.
Execution halted