Multiple platform build/check report for BioC 3.21 - CHECK results for SurfR on kjohnson3

Hostname	OS	Arch (*)	R version	Installed pkgs
nebbiolo1	Linux (Ubuntu 24.04.1 LTS)	x86_64	R Under development (unstable) (2024-10-21 r87258) -- "Unsuffered Consequences"	4749
palomino7	Windows Server 2022 Datacenter	x64	R Under development (unstable) (2024-10-26 r87273 ucrt) -- "Unsuffered Consequences"	4461
lconway	macOS 12.7.1 Monterey	x86_64	R Under development (unstable) (2024-11-20 r87352) -- "Unsuffered Consequences"	4411
kjohnson3	macOS 13.7.1 Ventura	arm64	R Under development (unstable) (2024-11-20 r87352) -- "Unsuffered Consequences"	4366
kunpeng2	Linux (openEuler 22.03 LTS-SP1)	aarch64	R Under development (unstable) (2024-11-24 r87369) -- "Unsuffered Consequences"	4276
Click on any hostname to see more info about the system (e.g. compilers) () as reported by 'uname -p', except on Windows and Mac OS X*

CHECK results for SurfR on kjohnson3

To the developers/maintainers of the SurfR package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/SurfR.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results

Summary

Package: SurfR

Version: 1.3.3

Command: /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:SurfR.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings SurfR_1.3.3.tar.gz

StartedAt: 2024-12-10 05:46:46 -0500 (Tue, 10 Dec 2024)

EndedAt: 2024-12-10 05:50:33 -0500 (Tue, 10 Dec 2024)

EllapsedTime: 226.2 seconds

RetCode: 1

Status: ERROR

CheckDir: SurfR.Rcheck

Warnings: NA

Command output

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### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:SurfR.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings SurfR_1.3.3.tar.gz
###
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* using log directory ‘/Users/biocbuild/bbs-3.21-bioc/meat/SurfR.Rcheck’
* using R Under development (unstable) (2024-11-20 r87352)
* using platform: aarch64-apple-darwin20
* R was compiled by
    Apple clang version 14.0.0 (clang-1400.0.29.202)
    GNU Fortran (GCC) 12.2.0
* running under: macOS Ventura 13.7.1
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘SurfR/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘SurfR’ version ‘1.3.3’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ...Warning: unable to access index for repository https://CRAN.R-project.org/src/contrib:
  cannot open URL 'https://CRAN.R-project.org/src/contrib/PACKAGES'
 ERROR
Namespace dependency missing from DESCRIPTION Imports/Depends entries: ‘rjson’

Imports includes 24 non-default packages.
Importing from so many packages makes the package vulnerable to any of
them becoming unavailable.  Move as many as possible to Suggests and
use conditionally.

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
* DONE

Status: 1 ERROR
See
  ‘/Users/biocbuild/bbs-3.21-bioc/meat/SurfR.Rcheck/00check.log’
for details.

CHECK results for SurfR on kjohnson3

Summary

Command output

Installation output

Tests output

Example timings