Multiple platform build/check report for BioC 3.22 - BUILD results for Statial on lconway

Hostname	OS	Arch (*)	R version	Installed pkgs
nebbiolo2	Linux (Ubuntu 24.04.3 LTS)	x86_64	4.5.1 Patched (2025-08-23 r88802) -- "Great Square Root"	4719
lconway	macOS 12.7.1 Monterey	x86_64	4.5.1 Patched (2025-09-10 r88807) -- "Great Square Root"	4538
kjohnson3	macOS 13.7.7 Ventura	arm64	4.5.1 Patched (2025-09-10 r88807) -- "Great Square Root"	4522
taishan	Linux (openEuler 24.03 LTS)	aarch64	4.5.0 (2025-04-11) -- "How About a Twenty-Six"	4543
Click on any hostname to see more info about the system (e.g. compilers) () as reported by 'uname -p', except on Windows and Mac OS X*

BUILD results for Statial on lconway

To the developers/maintainers of the Statial package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/Statial.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results

Summary

Package: Statial

Version: 1.11.5

Command: /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data Statial

StartedAt: 2025-09-14 18:45:15 -0400 (Sun, 14 Sep 2025)

EndedAt: 2025-09-14 18:52:08 -0400 (Sun, 14 Sep 2025)

EllapsedTime: 412.1 seconds

RetCode: 1

Status: ERROR

PackageFile: None

PackageFileSize: NA

Command output

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### Running command:
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###   /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data Statial
###
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* checking for file ‘Statial/DESCRIPTION’ ... OK
* preparing ‘Statial’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘Statial.Rmd’ using rmarkdown
2025-09-14 18:46:19.851 R[82144:281186715] XType: com.apple.fonts is not accessible.
2025-09-14 18:46:19.852 R[82144:281186715] XType: XTFontStaticRegistry is enabled.

Quitting from Statial.Rmd:284-286 [survival signifPlot]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error:
! <ggplot2::element_rect> object properties are invalid:
- @linewidth must be <NULL>, <integer>, or <double>, not <logical>
---
Backtrace:
    ▆
 1. └─spicyR::signifPlot(survivalResults)
 2.   └─spicyR:::survBubble(...)
 3.     ├─ggplot2::theme(...)
 4.     │ └─ggplot2:::find_args(..., complete = NULL, validate = NULL)
 5.     │   └─base::mget(args, envir = env)
 6.     └─ggplot2::element_rect(linewidth = NA)
 7.       └─S7::new_object(...)
 8.         └─S7::validate(object, recursive = !parent_validated)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'Statial.Rmd' failed with diagnostics:
<ggplot2::element_rect> object properties are invalid:
- @linewidth must be <NULL>, <integer>, or <double>, not <logical>
--- failed re-building ‘Statial.Rmd’

SUMMARY: processing the following file failed:
  ‘Statial.Rmd’

Error: Vignette re-building failed.
Execution halted