| Back to Build/check report for BioC 3.23: simplified long | 
  | 
This page was generated on 2025-11-03 11:33 -0500 (Mon, 03 Nov 2025).
| Hostname | OS | Arch (*) | R version | Installed pkgs | 
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 24.04.3 LTS) | x86_64 | R Under development (unstable) (2025-10-20 r88955) -- "Unsuffered Consequences" | 4775 | 
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 1997/2321 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| SingleCellSignalR 2.1.0  (landing page) Jean-Philippe Villemin 
  | nebbiolo1 | Linux (Ubuntu 24.04.3 LTS) / x86_64 | OK | OK | WARNINGS | |||||||||
| 
To the developers/maintainers of the SingleCellSignalR package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/SingleCellSignalR.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.  | 
| Package: SingleCellSignalR | 
| Version: 2.1.0 | 
| Command: /home/biocbuild/bbs-3.23-bioc/R/bin/R CMD check --install=check:SingleCellSignalR.install-out.txt --library=/home/biocbuild/bbs-3.23-bioc/R/site-library --timings SingleCellSignalR_2.1.0.tar.gz | 
| StartedAt: 2025-11-03 03:29:00 -0500 (Mon, 03 Nov 2025) | 
| EndedAt: 2025-11-03 03:34:47 -0500 (Mon, 03 Nov 2025) | 
| EllapsedTime: 347.4 seconds | 
| RetCode: 0 | 
| Status: WARNINGS | 
| CheckDir: SingleCellSignalR.Rcheck | 
| Warnings: 1 | 
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### Running command:
###
###   /home/biocbuild/bbs-3.23-bioc/R/bin/R CMD check --install=check:SingleCellSignalR.install-out.txt --library=/home/biocbuild/bbs-3.23-bioc/R/site-library --timings SingleCellSignalR_2.1.0.tar.gz
###
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* using log directory ‘/home/biocbuild/bbs-3.23-bioc/meat/SingleCellSignalR.Rcheck’
* using R Under development (unstable) (2025-10-20 r88955)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    gcc (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
    GNU Fortran (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
* running under: Ubuntu 24.04.3 LTS
* using session charset: UTF-8
* checking for file ‘SingleCellSignalR/DESCRIPTION’ ... OK
* this is package ‘SingleCellSignalR’ version ‘2.1.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘SingleCellSignalR’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... WARNING
Invalid license file pointers: LICENSE
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... OK
* checking PDF version of manual ... OK
* DONE
Status: 1 WARNING
See
  ‘/home/biocbuild/bbs-3.23-bioc/meat/SingleCellSignalR.Rcheck/00check.log’
for details.
SingleCellSignalR.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.23-bioc/R/bin/R CMD INSTALL SingleCellSignalR ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.23-bioc/R/site-library’ * installing *source* package ‘SingleCellSignalR’ ... ** this is package ‘SingleCellSignalR’ version ‘2.1.0’ ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (SingleCellSignalR)
SingleCellSignalR.Rcheck/SingleCellSignalR-Ex.timings
| name | user | system | elapsed | |
| SCSRNet-class | 0.191 | 0.009 | 0.200 | |
| SCSRNet | 0.211 | 0.003 | 0.214 | |
| SCSRNoNet-class | 1.169 | 0.136 | 1.306 | |
| SCSRNoNet | 0.152 | 0.005 | 0.157 | |
| autocrines | 0.154 | 0.019 | 0.172 | |
| bsrdmComp | 0.331 | 0.018 | 0.350 | |
| cellNetBubblePlot | 0.000 | 0.000 | 0.001 | |
| getAutocrines | 0.319 | 0.010 | 0.329 | |
| getParacrines | 0.322 | 0.008 | 0.331 | |
| infParamSC | 0.313 | 0.002 | 0.316 | |
| paracrines | 0.168 | 0.001 | 0.169 | |
| performInferences | 0.310 | 0.021 | 0.331 | |
| populations | 0.146 | 0.003 | 0.149 | |