Multiple platform build/check report for BioC 3.21 - BUILD results for SigCheck on kjohnson3

Hostname	OS	Arch (*)	R version	Installed pkgs
nebbiolo1	Linux (Ubuntu 24.04.1 LTS)	x86_64	R Under development (unstable) (2024-10-21 r87258) -- "Unsuffered Consequences"	4754
palomino7	Windows Server 2022 Datacenter	x64	R Under development (unstable) (2024-10-26 r87273 ucrt) -- "Unsuffered Consequences"	4472
lconway	macOS 12.7.1 Monterey	x86_64	R Under development (unstable) (2024-11-20 r87352) -- "Unsuffered Consequences"	4426
kjohnson3	macOS 13.7.1 Ventura	arm64	R Under development (unstable) (2024-11-20 r87352) -- "Unsuffered Consequences"	4381
kunpeng2	Linux (openEuler 22.03 LTS-SP1)	aarch64	R Under development (unstable) (2024-11-24 r87369) -- "Unsuffered Consequences"	4372
Click on any hostname to see more info about the system (e.g. compilers) () as reported by 'uname -p', except on Windows and Mac OS X*

BUILD results for SigCheck on kjohnson3

To the developers/maintainers of the SigCheck package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/SigCheck.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results

Summary

Package: SigCheck

Version: 2.39.0

Command: /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data SigCheck

StartedAt: 2024-12-22 17:39:57 -0500 (Sun, 22 Dec 2024)

EndedAt: 2024-12-22 17:40:10 -0500 (Sun, 22 Dec 2024)

EllapsedTime: 13.2 seconds

RetCode: 1

Status: ERROR

PackageFile: None

PackageFileSize: NA

Command output

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### Running command:
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###   /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data SigCheck
###
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* checking for file ‘SigCheck/DESCRIPTION’ ... OK
* preparing ‘SigCheck’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘SigCheck.Rnw’ using Sweave
Loading required namespace: Biobase

Error: processing vignette 'SigCheck.Rnw' failed with diagnostics:
 chunk 3 (label = showPhenoData) 
Error in varLabels(nki) : could not find function "varLabels"

--- failed re-building ‘SigCheck.Rnw’

SUMMARY: processing the following file failed:
  ‘SigCheck.Rnw’

Error: Vignette re-building failed.
Execution halted