Shuangbin Xu
| Snapshot Date: 2026-04-28 14:49 -0400 (Tue, 28 Apr 2026) |
| git_url: https://git.bioconductor.org/packages/SVP |
| git_branch: devel |
| git_last_commit: 4e36f87 |
| git_last_commit_date: 2026-04-28 09:04:37 -0400 (Tue, 28 Apr 2026) |
| Back to Build/check report for BioC 3.24: simplified long |
|
This page was generated on 2026-04-29 10:01 -0400 (Wed, 29 Apr 2026).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 24.04.4 LTS) | x86_64 | 4.6.0 RC (2026-04-17 r89917) -- "Because it was There" | 4843 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 2168/2366 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| SVP 1.5.0 (landing page) Shuangbin Xu
| nebbiolo2 | Linux (Ubuntu 24.04.4 LTS) / x86_64 | OK | OK | WARNINGS | | ||||||||
| See other builds for SVP in R Universe. | ||||||||||||||
|
To the developers/maintainers of the SVP package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/SVP.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: SVP |
| Version: 1.5.0 |
| Command: /home/biocbuild/bbs-3.24-bioc/R/bin/R CMD check --install=check:SVP.install-out.txt --library=/home/biocbuild/bbs-3.24-bioc/R/site-library --timings SVP_1.5.0.tar.gz |
| StartedAt: 2026-04-29 05:46:05 -0400 (Wed, 29 Apr 2026) |
| EndedAt: 2026-04-29 05:52:55 -0400 (Wed, 29 Apr 2026) |
| EllapsedTime: 409.5 seconds |
| RetCode: 0 |
| Status: WARNINGS |
| CheckDir: SVP.Rcheck |
| Warnings: 1 |
##############################################################################
##############################################################################
###
### Running command:
###
### /home/biocbuild/bbs-3.24-bioc/R/bin/R CMD check --install=check:SVP.install-out.txt --library=/home/biocbuild/bbs-3.24-bioc/R/site-library --timings SVP_1.5.0.tar.gz
###
##############################################################################
##############################################################################
* using log directory ‘/home/biocbuild/bbs-3.24-bioc/meat/SVP.Rcheck’
* using R version 4.6.0 RC (2026-04-17 r89917)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
gcc (Ubuntu 13.3.0-6ubuntu2~24.04.1) 13.3.0
GNU Fortran (Ubuntu 13.3.0-6ubuntu2~24.04.1) 13.3.0
* running under: Ubuntu 24.04.4 LTS
* using session charset: UTF-8
* current time: 2026-04-29 09:46:05 UTC
* checking for file ‘SVP/DESCRIPTION’ ... OK
* this is package ‘SVP’ version ‘1.5.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... INFO
Imports includes 22 non-default packages.
Importing from so many packages makes the package vulnerable to any of
them becoming unavailable. Move as many as possible to Suggests and
use conditionally.
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘SVP’ can be installed ... OK
* used C++ compiler: ‘g++ (Ubuntu 13.3.0-6ubuntu2~24.04.1) 13.3.0’
* checking installed package size ... INFO
installed size is 25.6Mb
sub-directories of 1Mb or more:
R 1.3Mb
data 1.4Mb
libs 22.6Mb
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... NOTE
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
LISAResult.Rd: SingleCellExperiment-class
LISAsce-method.Rd: SingleCellExperiment-class,
SpatialExperiment-class
SVPExperiment.Rd: SingleCellExperiment, SingleCellExperiment-class
cal_lisa_f1-method.Rd: SingleCellExperiment-class
cluster.assign-method.Rd: SingleCellExperiment-class
data_hpda_spe_cell_dec.Rd: SpatialExperiment-class
data_sceSubPbmc.Rd: SingleCellExperiment-class
extract_weight_adj-method.Rd: SingleCellExperiment-class,
SpatialExperiment-class
fscoreDfs.Rd: SingleCellExperiment-class, DataFrame-class, List-class
gsvaExps.Rd: SingleCellExperiment-class, colData, List-class,
assay<-, Annotated-class, metadata, Vector-class, mcols
mob_sce.Rd: SingleCellExperiment-class
pred.cell.signature-method.Rd: SingleCellExperiment-class
runCORR-method.Rd: SingleCellExperiment-class,
SpatialExperiment-class
runDetectSVG-method.Rd: SingleCellExperiment-class,
SpatialExperiment-class, SimpleList-class, DataFrame-class
runENCODE-method.Rd: SingleCellExperiment-class,
SpatialExperiment-class
runGLOBALBV-method.Rd: SingleCellExperiment-class,
SpatialExperiment-class
runKldSVG-method.Rd: SingleCellExperiment-class,
SpatialExperiment-class, SimpleList-class, DataFrame-class
runLISA-method.Rd: SingleCellExperiment-class,
SpatialExperiment-class, SimpleList-class
runLOCALBV-method.Rd: SingleCellExperiment-class,
SpatialExperiment-class, SimpleList-class
runMCA-method.Rd: SingleCellExperiment-class
runSGSA-method.Rd: SingleCellExperiment-class
runWKDE-method.Rd: SingleCellExperiment-class,
SpatialExperiment-class
svDfs.Rd: SingleCellExperiment-class, DataFrame-class, List-class
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking compilation flags in Makevars ... OK
* checking for GNU extensions in Makefiles ... INFO
GNU make is a SystemRequirements.
* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
* checking use of PKG_*FLAGS in Makefiles ... OK
* checking compiled code ... INFO
Note: information on .o files is not available
* checking files in ‘vignettes’ ... OK
* checking examples ... WARNING
Found the following significant warnings:
Warning in .local(x, ...) : 'normalizeCounts' is deprecated.
Warning in .local(x, ...) : 'normalizeCounts' is deprecated.
Warning in .local(x, ...) : 'normalizeCounts' is deprecated.
Warning in .local(x, ...) : 'pairwiseWilcox' is deprecated.
Warning in .local(x, ...) : 'summaryMarkerStats' is deprecated.
Warning in .local(x, ...) : 'sumCountsAcrossCells' is deprecated.
Warning in .local(x, ...) : 'summarizeAssayByGroup' is deprecated.
Warning in .local(x, ...) : 'numDetectedAcrossCells' is deprecated.
Warning in .local(x, ...) : 'summarizeAssayByGroup' is deprecated.
Deprecated functions may be defunct as soon as of the next release of
R.
See ?Deprecated.
Examples with CPU (user + system) or elapsed time > 5s
user system elapsed
runKldSVG-method 16.987 0.148 1.207
runSGSA-method 14.433 0.307 14.019
runWKDE-method 7.113 0.167 2.629
cluster.assign-method 3.636 0.104 5.405
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
Running ‘testthat.R’
OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... OK
* checking PDF version of manual ... OK
* DONE
Status: 1 WARNING, 1 NOTE
See
‘/home/biocbuild/bbs-3.24-bioc/meat/SVP.Rcheck/00check.log’
for details.
SVP.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.24-bioc/R/bin/R CMD INSTALL SVP ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.24-bioc/R/site-library’ * installing *source* package ‘SVP’ ... ** this is package ‘SVP’ version ‘1.5.0’ ** using staged installation ** libs using C++ compiler: ‘g++ (Ubuntu 13.3.0-6ubuntu2~24.04.1) 13.3.0’ g++ -std=gnu++20 -I"/home/biocbuild/bbs-3.24-bioc/R/include" -DNDEBUG -I'/home/biocbuild/bbs-3.24-bioc/R/site-library/Rcpp/include' -I'/home/biocbuild/bbs-3.24-bioc/R/site-library/RcppArmadillo/include' -I'/home/biocbuild/bbs-3.24-bioc/R/site-library/RcppParallel/include' -I'/home/biocbuild/bbs-3.24-bioc/R/site-library/RcppEigen/include' -I'/home/biocbuild/bbs-3.24-bioc/R/site-library/dqrng/include' -I/usr/local/include -fopenmp -DARMA_64BIT_WORD -DNDEBUG -DEIGEN_DONT_VECTORIZE -fpic -g -O2 -Wall -Werror=format-security -c RcppExports.cpp -o RcppExports.o g++ -std=gnu++20 -I"/home/biocbuild/bbs-3.24-bioc/R/include" -DNDEBUG -I'/home/biocbuild/bbs-3.24-bioc/R/site-library/Rcpp/include' -I'/home/biocbuild/bbs-3.24-bioc/R/site-library/RcppArmadillo/include' -I'/home/biocbuild/bbs-3.24-bioc/R/site-library/RcppParallel/include' -I'/home/biocbuild/bbs-3.24-bioc/R/site-library/RcppEigen/include' -I'/home/biocbuild/bbs-3.24-bioc/R/site-library/dqrng/include' -I/usr/local/include -fopenmp -DARMA_64BIT_WORD -DNDEBUG -DEIGEN_DONT_VECTORIZE -fpic -g -O2 -Wall -Werror=format-security -c autocorutils.cpp -o autocorutils.o g++ -std=gnu++20 -I"/home/biocbuild/bbs-3.24-bioc/R/include" -DNDEBUG -I'/home/biocbuild/bbs-3.24-bioc/R/site-library/Rcpp/include' -I'/home/biocbuild/bbs-3.24-bioc/R/site-library/RcppArmadillo/include' -I'/home/biocbuild/bbs-3.24-bioc/R/site-library/RcppParallel/include' -I'/home/biocbuild/bbs-3.24-bioc/R/site-library/RcppEigen/include' -I'/home/biocbuild/bbs-3.24-bioc/R/site-library/dqrng/include' -I/usr/local/include -fopenmp -DARMA_64BIT_WORD -DNDEBUG -DEIGEN_DONT_VECTORIZE -fpic -g -O2 -Wall -Werror=format-security -c bisp.cpp -o bisp.o g++ -std=gnu++20 -I"/home/biocbuild/bbs-3.24-bioc/R/include" -DNDEBUG -I'/home/biocbuild/bbs-3.24-bioc/R/site-library/Rcpp/include' -I'/home/biocbuild/bbs-3.24-bioc/R/site-library/RcppArmadillo/include' -I'/home/biocbuild/bbs-3.24-bioc/R/site-library/RcppParallel/include' -I'/home/biocbuild/bbs-3.24-bioc/R/site-library/RcppEigen/include' -I'/home/biocbuild/bbs-3.24-bioc/R/site-library/dqrng/include' -I/usr/local/include -fopenmp -DARMA_64BIT_WORD -DNDEBUG -DEIGEN_DONT_VECTORIZE -fpic -g -O2 -Wall -Werror=format-security -c cor.cpp -o cor.o g++ -std=gnu++20 -I"/home/biocbuild/bbs-3.24-bioc/R/include" -DNDEBUG -I'/home/biocbuild/bbs-3.24-bioc/R/site-library/Rcpp/include' -I'/home/biocbuild/bbs-3.24-bioc/R/site-library/RcppArmadillo/include' -I'/home/biocbuild/bbs-3.24-bioc/R/site-library/RcppParallel/include' -I'/home/biocbuild/bbs-3.24-bioc/R/site-library/RcppEigen/include' -I'/home/biocbuild/bbs-3.24-bioc/R/site-library/dqrng/include' -I/usr/local/include -fopenmp -DARMA_64BIT_WORD -DNDEBUG -DEIGEN_DONT_VECTORIZE -fpic -g -O2 -Wall -Werror=format-security -c extract.cpp -o extract.o g++ -std=gnu++20 -I"/home/biocbuild/bbs-3.24-bioc/R/include" -DNDEBUG -I'/home/biocbuild/bbs-3.24-bioc/R/site-library/Rcpp/include' -I'/home/biocbuild/bbs-3.24-bioc/R/site-library/RcppArmadillo/include' -I'/home/biocbuild/bbs-3.24-bioc/R/site-library/RcppParallel/include' -I'/home/biocbuild/bbs-3.24-bioc/R/site-library/RcppEigen/include' -I'/home/biocbuild/bbs-3.24-bioc/R/site-library/dqrng/include' -I/usr/local/include -fopenmp -DARMA_64BIT_WORD -DNDEBUG -DEIGEN_DONT_VECTORIZE -fpic -g -O2 -Wall -Werror=format-security -c gearysc.cpp -o gearysc.o g++ -std=gnu++20 -I"/home/biocbuild/bbs-3.24-bioc/R/include" -DNDEBUG -I'/home/biocbuild/bbs-3.24-bioc/R/site-library/Rcpp/include' -I'/home/biocbuild/bbs-3.24-bioc/R/site-library/RcppArmadillo/include' -I'/home/biocbuild/bbs-3.24-bioc/R/site-library/RcppParallel/include' -I'/home/biocbuild/bbs-3.24-bioc/R/site-library/RcppEigen/include' -I'/home/biocbuild/bbs-3.24-bioc/R/site-library/dqrng/include' -I/usr/local/include -fopenmp -DARMA_64BIT_WORD -DNDEBUG -DEIGEN_DONT_VECTORIZE -fpic -g -O2 -Wall -Werror=format-security -c getisord.cpp -o getisord.o g++ -std=gnu++20 -I"/home/biocbuild/bbs-3.24-bioc/R/include" -DNDEBUG -I'/home/biocbuild/bbs-3.24-bioc/R/site-library/Rcpp/include' -I'/home/biocbuild/bbs-3.24-bioc/R/site-library/RcppArmadillo/include' -I'/home/biocbuild/bbs-3.24-bioc/R/site-library/RcppParallel/include' -I'/home/biocbuild/bbs-3.24-bioc/R/site-library/RcppEigen/include' -I'/home/biocbuild/bbs-3.24-bioc/R/site-library/dqrng/include' -I/usr/local/include -fopenmp -DARMA_64BIT_WORD -DNDEBUG -DEIGEN_DONT_VECTORIZE -fpic -g -O2 -Wall -Werror=format-security -c kld.cpp -o kld.o g++ -std=gnu++20 -I"/home/biocbuild/bbs-3.24-bioc/R/include" -DNDEBUG -I'/home/biocbuild/bbs-3.24-bioc/R/site-library/Rcpp/include' -I'/home/biocbuild/bbs-3.24-bioc/R/site-library/RcppArmadillo/include' -I'/home/biocbuild/bbs-3.24-bioc/R/site-library/RcppParallel/include' -I'/home/biocbuild/bbs-3.24-bioc/R/site-library/RcppEigen/include' -I'/home/biocbuild/bbs-3.24-bioc/R/site-library/dqrng/include' -I/usr/local/include -fopenmp -DARMA_64BIT_WORD -DNDEBUG -DEIGEN_DONT_VECTORIZE -fpic -g -O2 -Wall -Werror=format-security -c lisa.cpp -o lisa.o g++ -std=gnu++20 -I"/home/biocbuild/bbs-3.24-bioc/R/include" -DNDEBUG -I'/home/biocbuild/bbs-3.24-bioc/R/site-library/Rcpp/include' -I'/home/biocbuild/bbs-3.24-bioc/R/site-library/RcppArmadillo/include' -I'/home/biocbuild/bbs-3.24-bioc/R/site-library/RcppParallel/include' -I'/home/biocbuild/bbs-3.24-bioc/R/site-library/RcppEigen/include' -I'/home/biocbuild/bbs-3.24-bioc/R/site-library/dqrng/include' -I/usr/local/include -fopenmp -DARMA_64BIT_WORD -DNDEBUG -DEIGEN_DONT_VECTORIZE -fpic -g -O2 -Wall -Werror=format-security -c mca.cpp -o mca.o g++ -std=gnu++20 -I"/home/biocbuild/bbs-3.24-bioc/R/include" -DNDEBUG -I'/home/biocbuild/bbs-3.24-bioc/R/site-library/Rcpp/include' -I'/home/biocbuild/bbs-3.24-bioc/R/site-library/RcppArmadillo/include' -I'/home/biocbuild/bbs-3.24-bioc/R/site-library/RcppParallel/include' -I'/home/biocbuild/bbs-3.24-bioc/R/site-library/RcppEigen/include' -I'/home/biocbuild/bbs-3.24-bioc/R/site-library/dqrng/include' -I/usr/local/include -fopenmp -DARMA_64BIT_WORD -DNDEBUG -DEIGEN_DONT_VECTORIZE -fpic -g -O2 -Wall -Werror=format-security -c metric.cpp -o metric.o g++ -std=gnu++20 -I"/home/biocbuild/bbs-3.24-bioc/R/include" -DNDEBUG -I'/home/biocbuild/bbs-3.24-bioc/R/site-library/Rcpp/include' -I'/home/biocbuild/bbs-3.24-bioc/R/site-library/RcppArmadillo/include' -I'/home/biocbuild/bbs-3.24-bioc/R/site-library/RcppParallel/include' -I'/home/biocbuild/bbs-3.24-bioc/R/site-library/RcppEigen/include' -I'/home/biocbuild/bbs-3.24-bioc/R/site-library/dqrng/include' -I/usr/local/include -fopenmp -DARMA_64BIT_WORD -DNDEBUG -DEIGEN_DONT_VECTORIZE -fpic -g -O2 -Wall -Werror=format-security -c moransi.cpp -o moransi.o g++ -std=gnu++20 -I"/home/biocbuild/bbs-3.24-bioc/R/include" -DNDEBUG -I'/home/biocbuild/bbs-3.24-bioc/R/site-library/Rcpp/include' -I'/home/biocbuild/bbs-3.24-bioc/R/site-library/RcppArmadillo/include' -I'/home/biocbuild/bbs-3.24-bioc/R/site-library/RcppParallel/include' -I'/home/biocbuild/bbs-3.24-bioc/R/site-library/RcppEigen/include' -I'/home/biocbuild/bbs-3.24-bioc/R/site-library/dqrng/include' -I/usr/local/include -fopenmp -DARMA_64BIT_WORD -DNDEBUG -DEIGEN_DONT_VECTORIZE -fpic -g -O2 -Wall -Werror=format-security -c pairknn.cpp -o pairknn.o g++ -std=gnu++20 -I"/home/biocbuild/bbs-3.24-bioc/R/include" -DNDEBUG -I'/home/biocbuild/bbs-3.24-bioc/R/site-library/Rcpp/include' -I'/home/biocbuild/bbs-3.24-bioc/R/site-library/RcppArmadillo/include' -I'/home/biocbuild/bbs-3.24-bioc/R/site-library/RcppParallel/include' -I'/home/biocbuild/bbs-3.24-bioc/R/site-library/RcppEigen/include' -I'/home/biocbuild/bbs-3.24-bioc/R/site-library/dqrng/include' -I/usr/local/include -fopenmp -DARMA_64BIT_WORD -DNDEBUG -DEIGEN_DONT_VECTORIZE -fpic -g -O2 -Wall -Werror=format-security -c rwr.cpp -o rwr.o g++ -std=gnu++20 -shared -L/home/biocbuild/bbs-3.24-bioc/R/lib -L/usr/local/lib -o SVP.so RcppExports.o autocorutils.o bisp.o cor.o extract.o gearysc.o getisord.o kld.o lisa.o mca.o metric.o moransi.o pairknn.o rwr.o -fopenmp -llapack -L/home/biocbuild/bbs-3.24-bioc/R/lib -lRblas -lgfortran -lm -lquadmath -L/home/biocbuild/bbs-3.24-bioc/R/lib -lR installing to /home/biocbuild/bbs-3.24-bioc/R/site-library/00LOCK-SVP/00new/SVP/libs ** R ** data ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (SVP)
SVP.Rcheck/tests/testthat.Rout
R version 4.6.0 RC (2026-04-17 r89917) -- "Because it was There"
Copyright (C) 2026 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
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Type 'q()' to quit R.
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
>
> library(testthat)
> library(SVP)
>
> test_check("SVP")
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|----|----|----|----|----|----|----|----|----|----|
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|----|----|----|----|----|----|----|----|----|----|
***************************************************
elapsed time is 0.047000 seconds
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|----|----|----|----|----|----|----|----|----|----|
***************************************************
elapsed time is 0.025000 seconds
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***************************************************
elapsed time is 0.023000 seconds
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|----|----|----|----|----|----|----|----|----|----|
***************************************************
elapsed time is 1.166000 seconds
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|----|----|----|----|----|----|----|----|----|----|
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|----|----|----|----|----|----|----|----|----|----|
***************************************************
The result is added to the input object, which can be extracted using
`LISAResult()` with `type='localG.SVP'`, and a specified `features`.
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 43 ]
>
> proc.time()
user system elapsed
42.835 0.984 15.183
SVP.Rcheck/SVP-Ex.timings
| name | user | system | elapsed | |
| CellCycle.Hs | 0.001 | 0.000 | 0.002 | |
| LISAResult | 0.467 | 0.013 | 0.470 | |
| LISAsce-method | 0.748 | 0.069 | 0.790 | |
| SVP-accessors | 2.970 | 0.099 | 3.070 | |
| SVPExperiment | 0.340 | 0.069 | 0.409 | |
| as_tbl_df | 3.996 | 0.069 | 4.056 | |
| cal_lisa_f1-method | 0.376 | 0.040 | 0.200 | |
| cluster.assign-method | 3.636 | 0.104 | 5.405 | |
| data_CancerSEA | 0.018 | 0.003 | 0.021 | |
| data_SenMayo | 0.003 | 0.000 | 0.003 | |
| data_hpda_spe_cell_dec | 0.013 | 0.001 | 0.014 | |
| data_sceSubPbmc | 0.045 | 0.007 | 0.052 | |
| extract_weight_adj-method | 0.175 | 0.004 | 0.179 | |
| fast_cor | 0.006 | 0.000 | 0.002 | |
| fscoreDfs | 1.109 | 0.058 | 1.168 | |
| gsvaExps | 0.819 | 0.003 | 0.822 | |
| mob_marker_genes | 0.001 | 0.000 | 0.001 | |
| mob_sce | 0.169 | 0.014 | 0.183 | |
| plot_heatmap_globalbv | 3.687 | 0.106 | 2.649 | |
| pred.cell.signature-method | 4.139 | 0.163 | 4.304 | |
| runCORR-method | 0.098 | 0.001 | 0.086 | |
| runDetectMarker-method | 1.077 | 0.071 | 0.980 | |
| runDetectSVG-method | 0.735 | 0.030 | 0.674 | |
| runENCODE-method | 0.825 | 0.006 | 0.831 | |
| runGLOBALBV-method | 1.099 | 0.007 | 0.280 | |
| runKldSVG-method | 16.987 | 0.148 | 1.207 | |
| runLISA-method | 2.057 | 0.009 | 2.032 | |
| runLOCALBV-method | 0.918 | 0.003 | 0.921 | |
| runMCA-method | 0.812 | 0.028 | 0.834 | |
| runSGSA-method | 14.433 | 0.307 | 14.019 | |
| runWKDE-method | 7.113 | 0.167 | 2.629 | |
| svDfs | 0.486 | 0.001 | 0.487 | |