Bill Wheeler
| Snapshot Date: 2025-05-01 13:00 -0400 (Thu, 01 May 2025) |
| git_url: https://git.bioconductor.org/packages/SUITOR |
| git_branch: devel |
| git_last_commit: f49f293 |
| git_last_commit_date: 2025-04-15 12:51:57 -0400 (Tue, 15 Apr 2025) |
| Back to Multiple platform build/check report for BioC 3.22: simplified long |
|
This page was generated on 2025-05-02 12:11 -0400 (Fri, 02 May 2025).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 24.04.1 LTS) | x86_64 | 4.5.0 (2025-04-11) -- "How About a Twenty-Six" | 4744 |
| palomino8 | Windows Server 2022 Datacenter | x64 | 4.5.0 (2025-04-11 ucrt) -- "How About a Twenty-Six" | 4506 |
| lconway | macOS 12.7.1 Monterey | x86_64 | 4.5.0 Patched (2025-04-21 r88169) -- "How About a Twenty-Six" | 4544 |
| kjohnson3 | macOS 13.7.1 Ventura | arm64 | 4.5.0 Patched (2025-04-21 r88169) -- "How About a Twenty-Six" | 4486 |
| taishan | Linux (openEuler 24.03 LTS) | aarch64 | 4.5.0 (2025-04-11) -- "How About a Twenty-Six" | 4434 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 2094/2304 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| SUITOR 1.11.0 (landing page) Bill Wheeler
| nebbiolo2 | Linux (Ubuntu 24.04.1 LTS) / x86_64 | OK | OK | OK | | ||||||||
| palomino8 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | | ||||||||
| lconway | macOS 12.7.1 Monterey / x86_64 | OK | OK | OK | OK | | ||||||||
| kjohnson3 | macOS 13.7.1 Ventura / arm64 | ERROR | ERROR | skipped | skipped | |||||||||
| taishan | Linux (openEuler 24.03 LTS) / aarch64 | OK | OK | OK | ||||||||||
|
To the developers/maintainers of the SUITOR package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/SUITOR.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: SUITOR |
| Version: 1.11.0 |
| Command: /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL SUITOR |
| StartedAt: 2025-05-01 15:04:19 -0400 (Thu, 01 May 2025) |
| EndedAt: 2025-05-01 15:04:25 -0400 (Thu, 01 May 2025) |
| EllapsedTime: 6.5 seconds |
| RetCode: 1 |
| Status: ERROR |
##############################################################################
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###
### Running command:
###
### /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL SUITOR
###
##############################################################################
##############################################################################
* installing to library ‘/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library’
* installing *source* package ‘SUITOR’ ...
** this is package ‘SUITOR’ version ‘1.11.0’
** using staged installation
** libs
using C compiler: ‘Apple clang version 15.0.0 (clang-1500.1.0.2.5)’
using SDK: ‘MacOSX11.3.sdk’
clang -arch arm64 -std=gnu2x -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c SUITOR_init.c -o SUITOR_init.o
clang -arch arm64 -std=gnu2x -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c source.c -o source.o
source.c:166:28: error: unknown type name 'n'
static double * dVec_alloc(n, initFlag, initVal)
^
source.c:166:31: error: unknown type name 'initFlag'
static double * dVec_alloc(n, initFlag, initVal)
^
source.c:166:41: error: unknown type name 'initVal'
static double * dVec_alloc(n, initFlag, initVal)
^
source.c:166:49: error: expected ';' after top level declarator
static double * dVec_alloc(n, initFlag, initVal)
^
;
source.c:169:1: error: expected identifier or '('
{
^
source.c:185:25: error: unknown type name 'n'
static int * iVec_alloc(n, initFlag, initVal)
^
source.c:185:28: error: unknown type name 'initFlag'
static int * iVec_alloc(n, initFlag, initVal)
^
source.c:185:38: error: unknown type name 'initVal'
static int * iVec_alloc(n, initFlag, initVal)
^
source.c:185:46: error: expected ';' after top level declarator
static int * iVec_alloc(n, initFlag, initVal)
^
;
source.c:186:18: error: redefinition of 'initVal' with a different type: 'int' vs 'double'
int n, initFlag, initVal;
^
source.c:168:8: note: previous definition is here
double initVal;
^
source.c:187:1: error: expected identifier or '('
{
^
source.c:203:26: error: unknown type name 'n'
static char * cVec_alloc(n, initFlag, initVal)
^
source.c:203:29: error: unknown type name 'initFlag'
static char * cVec_alloc(n, initFlag, initVal)
^
source.c:203:39: error: unknown type name 'initVal'
static char * cVec_alloc(n, initFlag, initVal)
^
source.c:203:47: error: expected ';' after top level declarator
static char * cVec_alloc(n, initFlag, initVal)
^
;
source.c:205:6: error: redefinition of 'initVal' with a different type: 'char' vs 'double'
char initVal;
^
source.c:168:8: note: previous definition is here
double initVal;
^
source.c:206:1: error: expected identifier or '('
{
^
source.c:222:23: error: unknown type name 'v'
static void copy_dVec(v, n, ret)
^
source.c:222:26: error: unknown type name 'n'
static void copy_dVec(v, n, ret)
^
fatal error: too many errors emitted, stopping now [-ferror-limit=]
20 errors generated.
make: *** [source.o] Error 1
ERROR: compilation failed for package ‘SUITOR’
* removing ‘/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library/SUITOR’