Back to Multiple platform build/check report for BioC 3.21:   simplified   long
ABCDEFGHIJKLMNOPQR[S]TUVWXYZ

This page was generated on 2024-11-22 11:35 -0500 (Fri, 22 Nov 2024).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 24.04.1 LTS)x86_64R Under development (unstable) (2024-10-21 r87258) -- "Unsuffered Consequences" 4742
palomino7Windows Server 2022 Datacenterx64R Under development (unstable) (2024-10-26 r87273 ucrt) -- "Unsuffered Consequences" 4456
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 2037/2270HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
SRAdb 1.69.0  (landing page)
Jack Zhu
Snapshot Date: 2024-11-21 13:40 -0500 (Thu, 21 Nov 2024)
git_url: https://git.bioconductor.org/packages/SRAdb
git_branch: devel
git_last_commit: d144fd4
git_last_commit_date: 2024-10-29 09:33:50 -0500 (Tue, 29 Oct 2024)
nebbiolo1Linux (Ubuntu 24.04.1 LTS) / x86_64  ERROR    ERROR  skipped
palomino7Windows Server 2022 Datacenter / x64  ERROR    ERROR  skippedskipped


INSTALL results for SRAdb on palomino7

To the developers/maintainers of the SRAdb package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/SRAdb.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: SRAdb
Version: 1.69.0
Command: E:\biocbuild\bbs-3.21-bioc\R\bin\R.exe CMD INSTALL SRAdb
StartedAt: 2024-11-21 16:32:50 -0500 (Thu, 21 Nov 2024)
EndedAt: 2024-11-21 16:33:01 -0500 (Thu, 21 Nov 2024)
EllapsedTime: 11.1 seconds
RetCode: 1
Status:   ERROR  

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   E:\biocbuild\bbs-3.21-bioc\R\bin\R.exe CMD INSTALL SRAdb
###
##############################################################################
##############################################################################


* installing to library 'E:/biocbuild/bbs-3.21-bioc/R/library'
* installing *source* package 'SRAdb' ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
Error: object 'gunzip' is not exported by 'namespace:GEOquery'
Execution halted
ERROR: lazy loading failed for package 'SRAdb'
* removing 'E:/biocbuild/bbs-3.21-bioc/R/library/SRAdb'