Back to Multiple platform build/check report for BioC 3.21: simplified long |
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This page was generated on 2025-02-15 11:43 -0500 (Sat, 15 Feb 2025).
Hostname | OS | Arch (*) | R version | Installed pkgs |
---|---|---|---|---|
nebbiolo1 | Linux (Ubuntu 24.04.1 LTS) | x86_64 | R Under development (unstable) (2025-01-20 r87609) -- "Unsuffered Consequences" | 4720 |
palomino7 | Windows Server 2022 Datacenter | x64 | R Under development (unstable) (2025-01-21 r87610 ucrt) -- "Unsuffered Consequences" | 4482 |
lconway | macOS 12.7.1 Monterey | x86_64 | R Under development (unstable) (2025-01-22 r87618) -- "Unsuffered Consequences" | 4493 |
kjohnson3 | macOS 13.7.1 Ventura | arm64 | R Under development (unstable) (2025-01-20 r87609) -- "Unsuffered Consequences" | 4446 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
Package 2047/2295 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
SPLINTER 1.33.0 (landing page) Diana Low
| nebbiolo1 | Linux (Ubuntu 24.04.1 LTS) / x86_64 | OK | OK | OK | ![]() | ||||||||
palomino7 | Windows Server 2022 Datacenter / x64 | OK | OK | WARNINGS | OK | ![]() | ||||||||
lconway | macOS 12.7.1 Monterey / x86_64 | OK | OK | OK | OK | ![]() | ||||||||
kjohnson3 | macOS 13.7.1 Ventura / arm64 | OK | ERROR | skipped | skipped | |||||||||
To the developers/maintainers of the SPLINTER package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/SPLINTER.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
Package: SPLINTER |
Version: 1.33.0 |
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:SPLINTER.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings SPLINTER_1.33.0.tar.gz |
StartedAt: 2025-02-14 23:24:35 -0500 (Fri, 14 Feb 2025) |
EndedAt: 2025-02-14 23:30:40 -0500 (Fri, 14 Feb 2025) |
EllapsedTime: 365.3 seconds |
RetCode: 0 |
Status: OK |
CheckDir: SPLINTER.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:SPLINTER.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings SPLINTER_1.33.0.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/Users/biocbuild/bbs-3.21-bioc/meat/SPLINTER.Rcheck’ * using R Under development (unstable) (2025-01-22 r87618) * using platform: x86_64-apple-darwin20 * R was compiled by Apple clang version 14.0.0 (clang-1400.0.29.202) GNU Fortran (GCC) 14.2.0 * running under: macOS Monterey 12.7.6 * using session charset: UTF-8 * using option ‘--no-vignettes’ * checking for file ‘SPLINTER/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘SPLINTER’ version ‘1.33.0’ * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘SPLINTER’ can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... OK * checking LazyData ... OK * checking data for ASCII and uncompressed saves ... OK * checking sizes of PDF files under ‘inst/doc’ ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK Examples with CPU (user + system) or elapsed time > 5s user system elapsed eventPlot 12.499 0.247 12.833 * checking for unstated dependencies in vignettes ... OK * checking package vignettes ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: OK
SPLINTER.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL SPLINTER ### ############################################################################## ############################################################################## * installing to library ‘/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library’ * installing *source* package ‘SPLINTER’ ... ** this is package ‘SPLINTER’ version ‘1.33.0’ ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (SPLINTER)
SPLINTER.Rcheck/SPLINTER-Ex.timings
name | user | system | elapsed | |
acceptor.m | 0.002 | 0.001 | 0.002 | |
addEnsemblAnnotation | 0.005 | 0.001 | 0.006 | |
callPrimer3 | 0.000 | 0.000 | 0.001 | |
checkPrimer | 0.069 | 0.002 | 0.071 | |
compatible_cds | 0.001 | 0.001 | 0.002 | |
compatible_tx | 0.001 | 0.000 | 0.002 | |
donor.m | 0.001 | 0.001 | 0.001 | |
eventOutcomeCompare | 1.500 | 0.102 | 1.612 | |
eventOutcomeTranslate | 0.471 | 0.023 | 0.498 | |
eventPlot | 12.499 | 0.247 | 12.833 | |
extendROI | 0.690 | 0.021 | 0.718 | |
extractSpliceEvents | 0.003 | 0.000 | 0.004 | |
extractSpliceSites | 0.091 | 0.001 | 0.093 | |
findCompatibleEvents | 0.341 | 0.003 | 0.347 | |
findCompatibleExon | 0.205 | 0.001 | 0.208 | |
findTX | 0.012 | 0.000 | 0.013 | |
getPCRsizes | 2.449 | 0.163 | 2.625 | |
getRegionDNA | 0.365 | 0.022 | 0.389 | |
insertRegion | 0.202 | 0.002 | 0.205 | |
makeROI | 0.276 | 0.002 | 0.281 | |
makeUniqueIDs | 0.003 | 0.001 | 0.004 | |
pcr_result1 | 0.000 | 0.001 | 0.002 | |
plot_seqlogo | 0.041 | 0.003 | 0.045 | |
primers | 0.001 | 0.001 | 0.002 | |
psiPlot | 0.246 | 0.008 | 0.255 | |
region_minus_exon | 0.000 | 0.001 | 0.002 | |
roi | 0.001 | 0.002 | 0.002 | |
shapiroAcceptor | 0.594 | 0.046 | 0.645 | |
shapiroDonor | 0.502 | 0.025 | 0.529 | |
splice_data | 0.001 | 0.001 | 0.002 | |
splice_fasta | 0.001 | 0.001 | 0.002 | |
splitPCRhit | 0.002 | 0.000 | 0.003 | |
thecds | 0.001 | 0.001 | 0.002 | |
theexons | 0.001 | 0.001 | 0.003 | |
valid_cds | 0.001 | 0.001 | 0.001 | |
valid_tx | 0.001 | 0.001 | 0.002 | |