Back to Multiple platform build/check report for BioC 3.21:   simplified   long
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This page was generated on 2024-12-12 11:46 -0500 (Thu, 12 Dec 2024).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 24.04.1 LTS)x86_64R Under development (unstable) (2024-10-21 r87258) -- "Unsuffered Consequences" 4752
palomino7Windows Server 2022 Datacenterx64R Under development (unstable) (2024-10-26 r87273 ucrt) -- "Unsuffered Consequences" 4464
lconwaymacOS 12.7.1 Montereyx86_64R Under development (unstable) (2024-11-20 r87352) -- "Unsuffered Consequences" 4415
kjohnson3macOS 13.7.1 Venturaarm64R Under development (unstable) (2024-11-20 r87352) -- "Unsuffered Consequences" 4370
kunpeng2Linux (openEuler 22.03 LTS-SP1)aarch64R Under development (unstable) (2024-11-24 r87369) -- "Unsuffered Consequences" 4279
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 1923/2273HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
SEtools 1.21.0  (landing page)
Pierre-Luc Germain
Snapshot Date: 2024-12-11 13:40 -0500 (Wed, 11 Dec 2024)
git_url: https://git.bioconductor.org/packages/SEtools
git_branch: devel
git_last_commit: 17a9530
git_last_commit_date: 2024-10-29 10:40:00 -0500 (Tue, 29 Oct 2024)
nebbiolo1Linux (Ubuntu 24.04.1 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
palomino7Windows Server 2022 Datacenter / x64  OK    OK    OK    OK  NO, package depends on 'DESeq2' which is only available as a source package that needs compilation
lconwaymacOS 12.7.1 Monterey / x86_64  OK    OK    OK    OK  NO, package depends on 'DESeq2' which is only available as a source package that needs compilation
kjohnson3macOS 13.7.1 Ventura / arm64  OK    OK    OK    OK  NO, package depends on 'DESeq2' which is only available as a source package that needs compilation
kunpeng2Linux (openEuler 22.03 LTS-SP1) / aarch64  ERROR    ERROR  skipped


BUILD BIN results for SEtools on kjohnson3

To the developers/maintainers of the SEtools package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/SEtools.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: SEtools
Version: 1.21.0
Command: rm -rf SEtools.buildbin-libdir && mkdir SEtools.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh SEtools_1.21.0.tar.gz /Library/Frameworks/R.framework/Resources/bin/R SEtools.buildbin-libdir
StartedAt: 2024-12-12 07:28:30 -0500 (Thu, 12 Dec 2024)
EndedAt: 2024-12-12 07:28:45 -0500 (Thu, 12 Dec 2024)
EllapsedTime: 15.3 seconds
RetCode: 0
Status:   OK  
PackageFile: SEtools_1.21.0.tgz
PackageFileSize: 377.2 KiB

Command output

##############################################################################
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###
### Running command:
###
###   rm -rf SEtools.buildbin-libdir && mkdir SEtools.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh SEtools_1.21.0.tar.gz /Library/Frameworks/R.framework/Resources/bin/R SEtools.buildbin-libdir
###
##############################################################################
##############################################################################


>>>>>>> 
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=SEtools.buildbin-libdir SEtools_1.21.0.tar.gz'
>>>>>>> 

* installing *source* package ‘SEtools’ ...
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (SEtools)