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This page was generated on 2026-03-09 11:34 -0400 (Mon, 09 Mar 2026).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 24.04.3 LTS)x86_64R Under development (unstable) (2026-03-05 r89546) -- "Unsuffered Consequences" 4508
kjohnson3macOS 13.7.7 Venturaarm64R Under development (unstable) (2026-02-28 r89501) -- "Unsuffered Consequences" 3381
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 1747/2360HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
ReactomeGSA 1.25.1  (landing page)
Johannes Griss
Snapshot Date: 2026-03-08 13:40 -0400 (Sun, 08 Mar 2026)
git_url: https://git.bioconductor.org/packages/ReactomeGSA
git_branch: devel
git_last_commit: 8846b67
git_last_commit_date: 2026-01-28 04:15:35 -0400 (Wed, 28 Jan 2026)
nebbiolo1Linux (Ubuntu 24.04.3 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
kjohnson3macOS 13.7.7 Ventura / arm64  OK    ERROR  skippedskipped
See other builds for ReactomeGSA in R Universe.

BUILD results for ReactomeGSA on kjohnson3

To the developers/maintainers of the ReactomeGSA package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/ReactomeGSA.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: ReactomeGSA
Version: 1.25.1
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data ReactomeGSA
StartedAt: 2026-03-08 16:09:59 -0400 (Sun, 08 Mar 2026)
EndedAt: 2026-03-08 16:10:49 -0400 (Sun, 08 Mar 2026)
EllapsedTime: 50.7 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
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###
### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data ReactomeGSA
###
##############################################################################
##############################################################################


* checking for file ‘ReactomeGSA/DESCRIPTION’ ... OK
* preparing ‘ReactomeGSA’:
* checking DESCRIPTION meta-information ... OK
* installing the package (it is needed to build vignettes)
* creating vignettes ... ERROR
--- re-building ‘analysing-scRNAseq.Rmd’ using rmarkdown

Quitting from analysing-scRNAseq.Rmd:57-62 [unnamed-chunk-2]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `library()`:
! there is no package called 'ReactomeGSA.data'
---
Backtrace:
    ▆
 1. └─base::library(ReactomeGSA.data)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'analysing-scRNAseq.Rmd' failed with diagnostics:
there is no package called 'ReactomeGSA.data'
--- failed re-building ‘analysing-scRNAseq.Rmd’

--- re-building ‘reanalysing-public-data.Rmd’ using rmarkdown

Quitting from reanalysing-public-data.Rmd:153-164 [unnamed-chunk-10]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error:
! Failed to connect to ReactomeGSA at 'https://gsa.reactome.org/: cannot open the connection to 'https://gsa.reactome.org/0.1/methods'. Try reverting the ReactomeGSA url to http://gsa.reactome.org using options(reactome_gsa.url = "http://gsa.reactome.org").
---
Backtrace:
    ▆
 1. └─ReactomeGSA::perform_reactome_analysis(my_request)
 2.   └─ReactomeGSA::start_reactome_analysis(...)
 3.     └─ReactomeGSA:::check_reactome_url(reactome_url = reactome_url)
 4.       └─base::tryCatch(...)
 5.         └─base (local) tryCatchList(expr, classes, parentenv, handlers)
 6.           └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])
 7.             └─value[[3L]](cond)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'reanalysing-public-data.Rmd' failed with diagnostics:
Failed to connect to ReactomeGSA at 'https://gsa.reactome.org/: cannot open the connection to 'https://gsa.reactome.org/0.1/methods'. Try reverting the ReactomeGSA url to http://gsa.reactome.org using options(reactome_gsa.url = "http://gsa.reactome.org").
--- failed re-building ‘reanalysing-public-data.Rmd’

--- re-building ‘using-reactomegsa.Rmd’ using rmarkdown

Quitting from using-reactomegsa.Rmd:110-113 [add_dataset]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `library()`:
! there is no package called 'ReactomeGSA.data'
---
Backtrace:
    ▆
 1. └─base::library(ReactomeGSA.data)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'using-reactomegsa.Rmd' failed with diagnostics:
there is no package called 'ReactomeGSA.data'
--- failed re-building ‘using-reactomegsa.Rmd’

SUMMARY: processing the following files failed:
  ‘analysing-scRNAseq.Rmd’ ‘reanalysing-public-data.Rmd’
  ‘using-reactomegsa.Rmd’

Error: Vignette re-building failed.
Execution halted