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This page was generated on 2026-04-10 11:35 -0400 (Fri, 10 Apr 2026).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 24.04.4 LTS)x86_644.6.0 alpha (2026-04-05 r89794) 4917
kjohnson3macOS 13.7.7 Venturaarm64R Under development (unstable) (2026-03-26 r89717) -- "Unsuffered Consequences" 4629
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 1756/2388HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
RcwlPipelines 1.27.0  (landing page)
Qiang Hu
Snapshot Date: 2026-04-09 13:40 -0400 (Thu, 09 Apr 2026)
git_url: https://git.bioconductor.org/packages/RcwlPipelines
git_branch: devel
git_last_commit: a60693c
git_last_commit_date: 2026-04-07 13:07:53 -0400 (Tue, 07 Apr 2026)
nebbiolo1Linux (Ubuntu 24.04.4 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
kjohnson3macOS 13.7.7 Ventura / arm64  OK    ERROR  skippedskipped
See other builds for RcwlPipelines in R Universe.

BUILD results for RcwlPipelines on kjohnson3

To the developers/maintainers of the RcwlPipelines package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/RcwlPipelines.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: RcwlPipelines
Version: 1.27.0
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data RcwlPipelines
StartedAt: 2026-04-09 16:58:07 -0400 (Thu, 09 Apr 2026)
EndedAt: 2026-04-09 16:58:22 -0400 (Thu, 09 Apr 2026)
EllapsedTime: 14.1 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
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###
### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data RcwlPipelines
###
##############################################################################
##############################################################################


* checking for file ‘RcwlPipelines/DESCRIPTION’ ... OK
* preparing ‘RcwlPipelines’:
* checking DESCRIPTION meta-information ... OK
* installing the package (it is needed to build vignettes)
* creating vignettes ... ERROR
--- re-building ‘RcwlPipelines.Rmd’ using rmarkdown
trying URL 'https://github.com/rworkflow/RcwlRecipes/archive/dev.zip'
downloaded 421 KB


Quitting from RcwlPipelines.Rmd:142-145 [unnamed-chunk-6]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `dyn.load()`:
! unable to load shared object '/Library/Frameworks/R.framework/Versions/4.6/Resources/library/igraph/libs/igraph.so':
  dlopen(/Library/Frameworks/R.framework/Versions/4.6/Resources/library/igraph/libs/igraph.so, 0x0006): Symbol not found: _R_getRegisteredNamespace
  Referenced from: <D5FEE207-EB8F-3FC2-BC24-84E97E708ECA> /Library/Frameworks/R.framework/Versions/4.6/Resources/library/igraph/libs/igraph.so
  Expected in:     <9885FFC9-0B1B-386C-8515-0CC182A63B5A> /Library/Frameworks/R.framework/Versions/4.6/Resources/lib/libR.dylib
---
Backtrace:
    ▆
 1. ├─Rcwl::plotCWL(rnaseq_Sf)
 2. │ └─Rcwl:::plotGraph(cwl, output = output, layout = layout, ...)
 3. │   └─DiagrammeR::render_graph(graph, layout = layout, ...)
 4. │     └─to_igraph(graph) %>% igraph::layout_with_sugiyama()
 5. └─base::loadNamespace(x)
 6.   └─base::library.dynam(lib, package, package.lib)
 7.     └─base::dyn.load(file, DLLpath = DLLpath, ...)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'RcwlPipelines.Rmd' failed with diagnostics:
unable to load shared object '/Library/Frameworks/R.framework/Versions/4.6/Resources/library/igraph/libs/igraph.so':
  dlopen(/Library/Frameworks/R.framework/Versions/4.6/Resources/library/igraph/libs/igraph.so, 0x0006): Symbol not found: _R_getRegisteredNamespace
  Referenced from: <D5FEE207-EB8F-3FC2-BC24-84E97E708ECA> /Library/Frameworks/R.framework/Versions/4.6/Resources/library/igraph/libs/igraph.so
  Expected in:     <9885FFC9-0B1B-386C-8515-0CC182A63B5A> /Library/Frameworks/R.framework/Versions/4.6/Resources/lib/libR.dylib
--- failed re-building ‘RcwlPipelines.Rmd’

SUMMARY: processing the following file failed:
  ‘RcwlPipelines.Rmd’

Error: Vignette re-building failed.
Execution halted