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This page was generated on 2026-03-21 11:35 -0400 (Sat, 21 Mar 2026).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 24.04.3 LTS)x86_64R Under development (unstable) (2026-03-05 r89546) -- "Unsuffered Consequences" 4866
kjohnson3macOS 13.7.7 Venturaarm64R Under development (unstable) (2026-03-20 r89666) -- "Unsuffered Consequences" 4545
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 1725/2368HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
Rbec 1.19.0  (landing page)
Pengfan Zhang
Snapshot Date: 2026-03-20 13:40 -0400 (Fri, 20 Mar 2026)
git_url: https://git.bioconductor.org/packages/Rbec
git_branch: devel
git_last_commit: 89d9a5d
git_last_commit_date: 2025-10-29 11:08:40 -0400 (Wed, 29 Oct 2025)
nebbiolo1Linux (Ubuntu 24.04.3 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
kjohnson3macOS 13.7.7 Ventura / arm64  ERROR    ERROR  skippedskipped
See other builds for Rbec in R Universe.

INSTALL results for Rbec on kjohnson3

To the developers/maintainers of the Rbec package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/Rbec.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: Rbec
Version: 1.19.0
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL Rbec
StartedAt: 2026-03-20 18:20:19 -0400 (Fri, 20 Mar 2026)
EndedAt: 2026-03-20 18:20:23 -0400 (Fri, 20 Mar 2026)
EllapsedTime: 4.1 seconds
RetCode: 1
Status:   ERROR  

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL Rbec
###
##############################################################################
##############################################################################


* installing to library ‘/Library/Frameworks/R.framework/Versions/4.6/Resources/library’
* installing *source* package ‘Rbec’ ...
** this is package ‘Rbec’ version ‘1.19.0’
** using staged installation
** libs
using C++ compiler: ‘Apple clang version 17.0.0 (clang-1700.6.4.2)’
using SDK: ‘MacOSX26.2.sdk’
clang++ -arch arm64 -std=gnu++20 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.6/Resources/library/Rcpp/include' -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c RcppExports.cpp -o RcppExports.o
In file included from RcppExports.cpp:4:
In file included from ./../inst/include/Rbec.h:7:
./../inst/include/Rbec_RcppExports.h:14:14: warning: unused function 'validateSignature' [-Wunused-function]
   14 |         void validateSignature(const char* sig) {
      |              ^~~~~~~~~~~~~~~~~
1 warning generated.
clang++ -arch arm64 -std=gnu++20 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.6/Resources/library/Rcpp/include' -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c kmer_dist.cpp -o kmer_dist.o
clang++ -arch arm64 -std=gnu++20 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.6/Resources/library/Rcpp/include' -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c rcpp_test.cpp -o rcpp_test.o
In file included from rcpp_test.cpp:3:
/Library/Developer/CommandLineTools/usr/lib/clang/17/include/emmintrin.h:14:2: error: "This header is only meant to be used on x86 and x64 architecture"
   14 | #error "This header is only meant to be used on x86 and x64 architecture"
      |  ^
In file included from rcpp_test.cpp:3:
In file included from /Library/Developer/CommandLineTools/usr/lib/clang/17/include/emmintrin.h:17:
/Library/Developer/CommandLineTools/usr/lib/clang/17/include/xmmintrin.h:14:2: error: "This header is only meant to be used on x86 and x64 architecture"
   14 | #error "This header is only meant to be used on x86 and x64 architecture"
      |  ^
In file included from rcpp_test.cpp:3:
In file included from /Library/Developer/CommandLineTools/usr/lib/clang/17/include/emmintrin.h:17:
In file included from /Library/Developer/CommandLineTools/usr/lib/clang/17/include/xmmintrin.h:17:
/Library/Developer/CommandLineTools/usr/lib/clang/17/include/mmintrin.h:14:2: error: "This header is only meant to be used on x86 and x64 architecture"
   14 | #error "This header is only meant to be used on x86 and x64 architecture"
      |  ^
/Library/Developer/CommandLineTools/usr/lib/clang/17/include/mmintrin.h:39:3: error: use of undeclared identifier '__builtin_ia32_emms'; did you mean '__builtin_isless'?
   39 |   __builtin_ia32_emms();
      |   ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/c++/v1/__math/traits.h:171:10: note: '__builtin_isless' declared here
  171 |   return __builtin_isless((type)__x, (type)__y);
      |          ^
In file included from rcpp_test.cpp:3:
In file included from /Library/Developer/CommandLineTools/usr/lib/clang/17/include/emmintrin.h:17:
In file included from /Library/Developer/CommandLineTools/usr/lib/clang/17/include/xmmintrin.h:17:
/Library/Developer/CommandLineTools/usr/lib/clang/17/include/mmintrin.h:39:23: error: too few arguments to function call, expected 2, have 0
   39 |   __builtin_ia32_emms();
      |   ~~~~~~~~~~~~~~~~~~~~^
/Library/Developer/CommandLineTools/usr/lib/clang/17/include/mmintrin.h:56:19: error: use of undeclared identifier '__builtin_ia32_vec_init_v2si'
   56 |     return (__m64)__builtin_ia32_vec_init_v2si(__i, 0);
      |                   ^
/Library/Developer/CommandLineTools/usr/lib/clang/17/include/mmintrin.h:73:12: error: use of undeclared identifier '__builtin_ia32_vec_ext_v2si'
   73 |     return __builtin_ia32_vec_ext_v2si((__v2si)__m, 0);
      |            ^
/Library/Developer/CommandLineTools/usr/lib/clang/17/include/mmintrin.h:130:19: error: use of undeclared identifier '__builtin_ia32_packsswb'
  130 |     return (__m64)__builtin_ia32_packsswb((__v4hi)__m1, (__v4hi)__m2);
      |                   ^
/Library/Developer/CommandLineTools/usr/lib/clang/17/include/mmintrin.h:155:19: error: use of undeclared identifier '__builtin_ia32_packssdw'
  155 |     return (__m64)__builtin_ia32_packssdw((__v2si)__m1, (__v2si)__m2);
      |                   ^
/Library/Developer/CommandLineTools/usr/lib/clang/17/include/mmintrin.h:180:19: error: use of undeclared identifier '__builtin_ia32_packuswb'
  180 |     return (__m64)__builtin_ia32_packuswb((__v4hi)__m1, (__v4hi)__m2);
      |                   ^
/Library/Developer/CommandLineTools/usr/lib/clang/17/include/mmintrin.h:207:19: error: use of undeclared identifier '__builtin_ia32_punpckhbw'
  207 |     return (__m64)__builtin_ia32_punpckhbw((__v8qi)__m1, (__v8qi)__m2);
      |                   ^
/Library/Developer/CommandLineTools/usr/lib/clang/17/include/mmintrin.h:230:19: error: use of undeclared identifier '__builtin_ia32_punpckhwd'
  230 |     return (__m64)__builtin_ia32_punpckhwd((__v4hi)__m1, (__v4hi)__m2);
      |                   ^
/Library/Developer/CommandLineTools/usr/lib/clang/17/include/mmintrin.h:251:19: error: use of undeclared identifier '__builtin_ia32_punpckhdq'
  251 |     return (__m64)__builtin_ia32_punpckhdq((__v2si)__m1, (__v2si)__m2);
      |                   ^
/Library/Developer/CommandLineTools/usr/lib/clang/17/include/mmintrin.h:278:19: error: use of undeclared identifier '__builtin_ia32_punpcklbw'
  278 |     return (__m64)__builtin_ia32_punpcklbw((__v8qi)__m1, (__v8qi)__m2);
      |                   ^
/Library/Developer/CommandLineTools/usr/lib/clang/17/include/mmintrin.h:301:19: error: use of undeclared identifier '__builtin_ia32_punpcklwd'
  301 |     return (__m64)__builtin_ia32_punpcklwd((__v4hi)__m1, (__v4hi)__m2);
      |                   ^
/Library/Developer/CommandLineTools/usr/lib/clang/17/include/mmintrin.h:322:19: error: use of undeclared identifier '__builtin_ia32_punpckldq'
  322 |     return (__m64)__builtin_ia32_punpckldq((__v2si)__m1, (__v2si)__m2);
      |                   ^
/Library/Developer/CommandLineTools/usr/lib/clang/17/include/mmintrin.h:343:19: error: use of undeclared identifier '__builtin_ia32_paddb'; did you mean '__builtin_arm_addg'?
  343 |     return (__m64)__builtin_ia32_paddb((__v8qi)__m1, (__v8qi)__m2);
      |                   ^
/Library/Developer/CommandLineTools/usr/lib/clang/17/include/mmintrin.h:343:19: error: first argument of MTE builtin function must be a pointer ('__v8qi' (vector of 8 'char' values) invalid)
  343 |     return (__m64)__builtin_ia32_paddb((__v8qi)__m1, (__v8qi)__m2);
      |                   ^                    ~~~~~~~~~~~~
/Library/Developer/CommandLineTools/usr/lib/clang/17/include/mmintrin.h:364:19: error: use of undeclared identifier '__builtin_ia32_paddw'; did you mean '__builtin_arm_addg'?
  364 |     return (__m64)__builtin_ia32_paddw((__v4hi)__m1, (__v4hi)__m2);
      |                   ^
/Library/Developer/CommandLineTools/usr/lib/clang/17/include/mmintrin.h:343:19: note: '__builtin_arm_addg' declared here
  343 |     return (__m64)__builtin_ia32_paddb((__v8qi)__m1, (__v8qi)__m2);
      |                   ^
fatal error: too many errors emitted, stopping now [-ferror-limit=]
20 errors generated.
make: *** [rcpp_test.o] Error 1
ERROR: compilation failed for package ‘Rbec’
* removing ‘/Library/Frameworks/R.framework/Versions/4.6/Resources/library/Rbec’