| Back to Build/check report for BioC 3.23: simplified long |
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This page was generated on 2025-11-06 11:32 -0500 (Thu, 06 Nov 2025).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 24.04.3 LTS) | x86_64 | R Under development (unstable) (2025-10-20 r88955) -- "Unsuffered Consequences" | 4818 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 1674/2323 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| RadioGx 2.15.0 (landing page) Benjamin Haibe-Kains
| nebbiolo1 | Linux (Ubuntu 24.04.3 LTS) / x86_64 | OK | OK | OK | |||||||||
|
To the developers/maintainers of the RadioGx package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/RadioGx.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: RadioGx |
| Version: 2.15.0 |
| Command: /home/biocbuild/bbs-3.23-bioc/R/bin/R CMD check --install=check:RadioGx.install-out.txt --library=/home/biocbuild/bbs-3.23-bioc/R/site-library --timings RadioGx_2.15.0.tar.gz |
| StartedAt: 2025-11-06 02:54:50 -0500 (Thu, 06 Nov 2025) |
| EndedAt: 2025-11-06 02:59:14 -0500 (Thu, 06 Nov 2025) |
| EllapsedTime: 264.4 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: RadioGx.Rcheck |
| Warnings: 0 |
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### Running command:
###
### /home/biocbuild/bbs-3.23-bioc/R/bin/R CMD check --install=check:RadioGx.install-out.txt --library=/home/biocbuild/bbs-3.23-bioc/R/site-library --timings RadioGx_2.15.0.tar.gz
###
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* using log directory ‘/home/biocbuild/bbs-3.23-bioc/meat/RadioGx.Rcheck’
* using R Under development (unstable) (2025-10-20 r88955)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
gcc (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
GNU Fortran (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
* running under: Ubuntu 24.04.3 LTS
* using session charset: UTF-8
* checking for file ‘RadioGx/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘RadioGx’ version ‘2.15.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘RadioGx’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking whether startup messages can be suppressed ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking LazyData ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... OK
* checking PDF version of manual ... OK
* DONE
Status: OK
RadioGx.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.23-bioc/R/bin/R CMD INSTALL RadioGx ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.23-bioc/R/site-library’ * installing *source* package ‘RadioGx’ ... ** this is package ‘RadioGx’ version ‘2.15.0’ ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (RadioGx)
RadioGx.Rcheck/RadioGx-Ex.timings
| name | user | system | elapsed | |
| RadioSet-accessors | 1.495 | 0.195 | 1.691 | |
| availableRSets | 0 | 0 | 0 | |
| checkRSetStructure | 0.347 | 0.028 | 0.375 | |
| computeAUC | 0.002 | 0.000 | 0.002 | |
| computeD10 | 0 | 0 | 0 | |
| computeSF2 | 0 | 0 | 0 | |
| dim-RadioSet-method | 0.913 | 0.022 | 0.935 | |
| doseResponseCurve | 0.372 | 0.019 | 0.391 | |
| downloadRSet | 0 | 0 | 0 | |
| linearQuadraticModel | 0.003 | 0.000 | 0.004 | |
| plotCurve | 0.018 | 0.004 | 0.021 | |
| radSensitivitySig | 0.580 | 0.058 | 0.638 | |
| show-RadioSet-method | 0.353 | 0.002 | 0.354 | |
| show-RadioSig-method | 0.471 | 0.005 | 0.474 | |
| showSigAnnot-RadioSig-method | 0.461 | 0.012 | 0.470 | |
| sub-RadioSet-ANY-ANY-ANY-method | 0.448 | 0.009 | 0.456 | |
| subsetTo-RadioSet-method | 0.093 | 0.002 | 0.094 | |
| summarizeMolecularProfiles-RadioSet-method | 0.431 | 0.029 | 0.459 | |
| summarizeSensitivityProfiles-RadioSet-method | 0.345 | 0.030 | 0.374 | |