| Back to Build/check report for BioC 3.23: simplified long |
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This page was generated on 2025-11-05 11:32 -0500 (Wed, 05 Nov 2025).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 24.04.3 LTS) | x86_64 | R Under development (unstable) (2025-10-20 r88955) -- "Unsuffered Consequences" | 4818 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 1788/2323 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| RNAdecay 1.31.0 (landing page) Reed Sorenson
| nebbiolo1 | Linux (Ubuntu 24.04.3 LTS) / x86_64 | OK | ERROR | skipped | |||||||||
|
To the developers/maintainers of the RNAdecay package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/RNAdecay.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: RNAdecay |
| Version: 1.31.0 |
| Command: /home/biocbuild/bbs-3.23-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data RNAdecay |
| StartedAt: 2025-11-04 19:34:22 -0500 (Tue, 04 Nov 2025) |
| EndedAt: 2025-11-04 19:45:56 -0500 (Tue, 04 Nov 2025) |
| EllapsedTime: 693.9 seconds |
| RetCode: 1 |
| Status: ERROR |
| PackageFile: None |
| PackageFileSize: NA |
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### Running command:
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### /home/biocbuild/bbs-3.23-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data RNAdecay
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* checking for file ‘RNAdecay/DESCRIPTION’ ... OK
* preparing ‘RNAdecay’:
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package (it is needed to build vignettes)
* creating vignettes ... ERROR
--- re-building ‘RNAdecay_workflow.Rmd’ using rmarkdown
Quitting from RNAdecay_workflow.Rmd:536-570 [unnamed-chunk-34]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `vapply()`:
! values must be length 1,
but FUN(X[[1]]) result is length 4
---
Backtrace:
▆
1. ├─base::print(p)
2. └─ggplot2 (local) `print.ggplot2::ggplot`(p)
3. ├─ggplot2::ggplot_gtable(data)
4. └─ggplot2 (local) `ggplot_gtable.ggplot2::ggplot_built`(data)
5. └─plot@guides$assemble(theme)
6. └─ggplot2 (local) assemble(..., self = self)
7. └─self$draw(theme, positions, theme$legend.direction)
8. └─ggplot2 (local) draw(..., self = self)
9. └─guides[[i]]$draw(...)
10. └─ggplot2 (local) draw(..., self = self)
11. └─self$build_decor(params$decor, grobs, elems, params)
12. └─ggplot2 (local) build_decor(...)
13. └─base::lapply(...)
14. └─ggplot2 (local) FUN(X[[i]], ...)
15. └─base::vapply(glyph, get_attr, which = "width", default = 0, numeric(1))
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'RNAdecay_workflow.Rmd' failed with diagnostics:
values must be length 1,
but FUN(X[[1]]) result is length 4
--- failed re-building ‘RNAdecay_workflow.Rmd’
SUMMARY: processing the following file failed:
‘RNAdecay_workflow.Rmd’
Error: Vignette re-building failed.
Execution halted