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This page was generated on 2025-09-04 12:04 -0400 (Thu, 04 Sep 2025).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 24.04.3 LTS)x86_644.5.1 (2025-06-13) -- "Great Square Root" 4822
lconwaymacOS 12.7.1 Montereyx86_644.5.1 (2025-06-13) -- "Great Square Root" 4617
kjohnson3macOS 13.7.7 Venturaarm644.5.1 Patched (2025-06-14 r88325) -- "Great Square Root" 4564
taishanLinux (openEuler 24.03 LTS)aarch644.5.0 (2025-04-11) -- "How About a Twenty-Six" 4541
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 1547/2321HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
PepsNMR 1.27.0  (landing page)
Manon Martin
Snapshot Date: 2025-09-03 13:45 -0400 (Wed, 03 Sep 2025)
git_url: https://git.bioconductor.org/packages/PepsNMR
git_branch: devel
git_last_commit: 6238695
git_last_commit_date: 2025-04-15 11:39:20 -0400 (Tue, 15 Apr 2025)
nebbiolo2Linux (Ubuntu 24.04.3 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
lconwaymacOS 12.7.1 Monterey / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published
kjohnson3macOS 13.7.7 Ventura / arm64  OK    OK    OK    OK  UNNEEDED, same version is already published
taishanLinux (openEuler 24.03 LTS) / aarch64  OK    OK    OK  


CHECK results for PepsNMR on nebbiolo2

To the developers/maintainers of the PepsNMR package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/PepsNMR.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: PepsNMR
Version: 1.27.0
Command: /home/biocbuild/bbs-3.22-bioc/R/bin/R CMD check --install=check:PepsNMR.install-out.txt --library=/home/biocbuild/bbs-3.22-bioc/R/site-library --timings PepsNMR_1.27.0.tar.gz
StartedAt: 2025-09-04 02:43:03 -0400 (Thu, 04 Sep 2025)
EndedAt: 2025-09-04 02:53:34 -0400 (Thu, 04 Sep 2025)
EllapsedTime: 630.7 seconds
RetCode: 0
Status:   OK  
CheckDir: PepsNMR.Rcheck
Warnings: 0

Command output

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### Running command:
###
###   /home/biocbuild/bbs-3.22-bioc/R/bin/R CMD check --install=check:PepsNMR.install-out.txt --library=/home/biocbuild/bbs-3.22-bioc/R/site-library --timings PepsNMR_1.27.0.tar.gz
###
##############################################################################
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* using log directory ‘/home/biocbuild/bbs-3.22-bioc/meat/PepsNMR.Rcheck’
* using R version 4.5.1 (2025-06-13)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    gcc (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
    GNU Fortran (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
* running under: Ubuntu 24.04.3 LTS
* using session charset: UTF-8
* checking for file ‘PepsNMR/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘PepsNMR’ version ‘1.27.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘PepsNMR’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... NOTE
checkRd: (-1) Normalization.Rd:47: Escaped LaTeX specials: \&
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
                      user system elapsed
PEPSNMR-package    192.080  2.568 194.709
PreprocessingChain 176.913  1.524 178.450
Warping              8.411  0.026   8.438
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... OK
* checking PDF version of manual ... OK
* DONE

Status: 1 NOTE
See
  ‘/home/biocbuild/bbs-3.22-bioc/meat/PepsNMR.Rcheck/00check.log’
for details.


Installation output

PepsNMR.Rcheck/00install.out

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/bbs-3.22-bioc/R/bin/R CMD INSTALL PepsNMR
###
##############################################################################
##############################################################################


* installing to library ‘/home/biocbuild/bbs-3.22-bioc/R/site-library’
* installing *source* package ‘PepsNMR’ ...
** this is package ‘PepsNMR’ version ‘1.27.0’
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (PepsNMR)

Tests output


Example timings

PepsNMR.Rcheck/PepsNMR-Ex.timings

nameusersystemelapsed
Apodization0.4430.0800.545
BaselineCorrection0.4220.0300.452
Bucketing0.0430.0000.043
Draw0.6810.0400.722
DrawPCA0.6880.0030.691
DrawSignal0.4430.0040.446
FirstOrderPhaseCorrection0.0240.0040.028
FourierTransform0.0180.0050.023
GroupDelayCorrection0.0350.0010.037
InternalReferencing0.0200.0020.021
NegativeValuesZeroing0.0150.0000.016
Normalization0.0060.0000.006
PEPSNMR-package192.080 2.568194.709
PreprocessingChain176.913 1.524178.450
ReadFids0.1990.0030.202
RegionRemoval0.0060.0000.006
SolventSuppression0.0890.0010.090
Warping8.4110.0268.438
WindowSelection0.0190.0000.019
ZeroFilling0.0520.0010.053
ZeroOrderPhaseCorrection0.0680.0000.068
ZoneAggregation0.1730.0150.211